Pairwise Alignments

Query, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

Subject, 649 a.a., TonB-dependent receptor (RefSeq) from Shewanella sp. ANA-3

 Score = 75.9 bits (185), Expect = 6e-18
 Identities = 131/699 (18%), Positives = 258/699 (36%), Gaps = 116/699 (16%)

Query: 5   PVSAAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGKTE 64
           P +   L+        A+ + +  E +VVTA+  +Q LS    S++V++ E ++     +
Sbjct: 18  PFALLALACSLQPLLSAQADDTELEHIVVTASAKDQQLSSAPASISVIDAEEIKLLPVKD 77

Query: 65  LYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDG--IQSADGYGAADINDKYGRN 122
           L D L    GV+V  G     ++ +RGM    + ++ +G  + S++G         +   
Sbjct: 78  LGDVLRGSVGVNVVSGNAGRNSLYVRGMDETYVLMLVNGKRVSSSNGLWR---GGNFDIT 134

Query: 123 TFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTYSGISNR 182
              +  + ++++V+G  S LYGS A+GGV+ + +KAP +     D+ +     YS     
Sbjct: 135 AIPIDAISRVEIVRGPMSALYGSDAVGGVINVITKAPTE-----DWQLTLDAEYS----- 184

Query: 183 YQGNHALAMRHGDGEALLTIDYWQGEETRNFNQDLYNREVDGYNLGFSHHYWLNDALRLK 242
                   M+ GDG          G+  R +N     +  D   L  +      D  +L 
Sbjct: 185 -------QMQEGDG----------GDRQR-YNVFTSGKLTDSLGLMLTAESAEQDLWQLP 226

Query: 243 THLEYFDDYAKRREGTSSIQKDDKWDLVS------FYEYQRSQTRLASVGADYTANLSWM 296
                FD   +R+  T  +     W L         Y+Y + +  L +  A+ +     +
Sbjct: 227 EITPTFDTIEERK--TKKLYSALTWQLADNQTLDFDYQYDKDKVPLTTY-AEKSKREQQI 283

Query: 297 D------TLEGKFYWRSTE---NITQTNRLMANDR-SGAGILSYRRELRDEGFNDEALGA 346
           +      T +  + W  T+   N+  +     N R S    L    + ++  F   +  +
Sbjct: 284 ERNTFGLTHKADWQWGQTQLEANLEDSKLYDYNSRYSLQPPLGRHIDEKNTSFKATSFFS 343

Query: 347 TLNAQKEWQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGDDLQADEPFAPAREYRFGV 406
                  WQQ        + +  + H  +    ++   + GD +            ++ +
Sbjct: 344 L------WQQD-------FTLGGEYHKTEVEDPVQYPTTKGDSVD-----------QYSL 379

Query: 407 YGQDNL-LLGDWTLAAGLRFDAQKLSPKNTDRIHGYKVVTMGSSEWSPSASISYQWHPEW 465
           + QD +  L DWTL  G R++  +    N                 SP A I Y+   + 
Sbjct: 380 FAQDEIDFLDDWTLTLGARYEDNEKYGNNL----------------SPRAYIVYRATDKL 423

Query: 466 NTYLSYNHGFRAPSYDKAYGASDHSFVPLT---PFIIKPNNKLRAETSDSFELGSKYDNG 522
                    FRAP    A   S  +F  ++      +  N  L  ETS ++E      + 
Sbjct: 424 TFKGGVGTAFRAP----ALFESSPTFASVSCGGACSVVGNPDLDPETSVNYEFSVLMSDN 479

Query: 523 QTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVKTYGAEMSVMHRLDDRWSV 582
                   +++   + I V    +D  + S  + Y N + V   G E++    L +  S+
Sbjct: 480 TWDISATAYHNKVKDLITVST--WDRVSPS--RTYYNESEVTLQGIELTGRIDLTEDLSL 535

Query: 583 ENKLGYVDGKDGENQYVRTLTPLEGSVQLN-YQRERWDAYSRLNWASAMSRVPTCTTEQG 641
           +    Y+D +  +   +        ++QL+ +  + W  Y   N+               
Sbjct: 536 KGNYSYLDTEKSDGSELNGRPDQTANLQLDWHMTDDWQLYVSGNYFG-----------DY 584

Query: 642 KETECATTTGWVSWDIGLNYQWNAQLSASFNVVNLLDRE 680
            ++     +G+  +D G +Y+    +     + N  + +
Sbjct: 585 LDSSAIKRSGYSRFDFGTSYRLTENIKLRAGMTNFTNEQ 623