Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  271 bits (694), Expect = 3e-77
 Identities = 152/384 (39%), Positives = 228/384 (59%), Gaps = 9/384 (2%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           + F  LGL   L+  +    + Q T +QQ+AIP  + GRDL+ +++TG+GKT  F LP+L
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 65  HKSL------KTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFN 118
            +        K++    + PR L+L PTRELA QV+   +     L + +  I GG   N
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 119 DQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNA 178
            QV+A++RG   +VA PGRL D     S+ L  +E LVLDEADRMLD+GF  +++++  A
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVL-A 179

Query: 179 AKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKE 238
               +RQ L+FSAT    D+ D+A +LL+ P+RI +   +   + I Q  +      HK 
Sbjct: 180 RLPAKRQNLLFSATFSK-DITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLP-ASHKR 237

Query: 239 ALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFER 298
           ALL  ++    + QV++FT T+   +RL E L+++ L AVA+ GN +Q  R   +  F+ 
Sbjct: 238 ALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKA 297

Query: 299 AVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD 358
              +ILV TD+A+RGLDI  + HV+NF++P   E+YVHR+GRTGRAG  G+A+SLV P +
Sbjct: 298 GEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 359 WESFKRVEAFLQQEIQFEVLAGLE 382
            +  K +E   +Q+I    L G +
Sbjct: 358 EKLLKSIERMTKQKIADGDLMGFD 381