Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., ATP-dependent RNA helicase SrmB from Pseudomonas fluorescens FW300-N2E2

 Score =  289 bits (740), Expect = 1e-82
 Identities = 173/448 (38%), Positives = 260/448 (58%), Gaps = 16/448 (3%)

Query: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
           F    L  RLLK +A   F + T +Q  AIPL + GRDL  +++TGSGKT AFVLP+L++
Sbjct: 2   FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNR 61

Query: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126
            L   A      + LIL+PTRELA+Q   E+          + LITGGE+F  Q   L +
Sbjct: 62  -LIGPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK 120

Query: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186
            P  ++ TPGR+ + L+  +L L+ +E LVLDEADRMLD+GFA++++R+ +   +R+ QT
Sbjct: 121 VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECVNRQ-QT 179

Query: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILA 246
           ++FSAT   + + +M  ++LN P+ + +   S+ +    Q     DH  HKE +++ +LA
Sbjct: 180 MLFSATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLLA 239

Query: 247 DAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVT 306
           +  Y + I+FT TRA  DR+  +L     KA  L G  +Q  R   + + ++   KILV 
Sbjct: 240 NETYEKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVA 299

Query: 307 TDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVE 366
           TDVA+RGLD+  +  VINFDMP+  +EYVHR+GRTGRAGN G A+SL+   DW     +E
Sbjct: 300 TDVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIE 359

Query: 367 AFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPT----------QRVNKAKAPSKSKKAA 416
            +L+Q  +   +  ++G + G K  +A  KA             ++   AKAP+K +K A
Sbjct: 360 RYLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKVDAKGDKKKTGAKAPTK-RKTA 418

Query: 417 PRDKSFYQNVAVGDSVFIPKKKVAPKPE 444
            R K+   ++   D +   K++   KPE
Sbjct: 419 NRPKADAPSLVSKDGMAPLKRR---KPE 443