Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  271 bits (694), Expect = 3e-77
 Identities = 159/421 (37%), Positives = 239/421 (56%), Gaps = 11/421 (2%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           + F  LGL   L   +    + Q T +QQ+AIP  + GRDL+ +++TG+GKT  F LP+L
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 65  HKSL------KTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFN 118
                     +   +  K PR L+L PTRELA QV+   +     L   +T I GG   N
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN 120

Query: 119 DQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNA 178
            Q++A+A+G   +VA PGRL D  + +++ L  +E LVLDEADRMLD+GF  +++++  A
Sbjct: 121 PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVL-A 179

Query: 179 AKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKE 238
               +RQ L+FSAT    D+ D+A +LL+ P+RI +   +   + I Q  +      HK 
Sbjct: 180 KLPAKRQNLLFSATFSK-DITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVA-ASHKR 237

Query: 239 ALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFER 298
           ALL  ++    + QV++FT T+   +RL E L ++ L A A+ GN +Q  R   +  F+ 
Sbjct: 238 ALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKA 297

Query: 299 AVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD 358
              +ILV TD+A+RGLDI  + HV+NF++P   E+YVHR+GRTGRAG  G+A+SLV P +
Sbjct: 298 NQVRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 357

Query: 359 WESFKRVEAFLQQEIQFEVLAGLEGK-FKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAP 417
            +  K +E   +Q I    L G +    +  KP   +P+    QR  + KA  +  K A 
Sbjct: 358 EKLLKGIERMTKQRIPEGDLMGFDASAIEAEKPEVREPRQPRPQR-GEGKARGERNKPAE 416

Query: 418 R 418
           +
Sbjct: 417 K 417