Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  300 bits (768), Expect = 6e-86
 Identities = 169/414 (40%), Positives = 244/414 (58%), Gaps = 2/414 (0%)

Query: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
           F    L  RLLK +A   F + T +Q  AIP  + GRDL  +++TGSGKT AFVLPML++
Sbjct: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61

Query: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126
            L   A    D R LIL+PTRELA+Q   E+          + +ITGGE+F  Q   L +
Sbjct: 62  -LIGDAVVRTDVRALILLPTRELAQQTLKEVERFSQFTFIKSAMITGGEDFKVQAAVLRK 120

Query: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186
            P  ++ TPGR+ +HL+  +L L+ +E L+LDEADRMLD+GFA++++R+      +R+QT
Sbjct: 121 VPDILIGTPGRMIEHLNAGTLILKDVEMLILDEADRMLDMGFAEDVQRLVGECA-KRQQT 179

Query: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILA 246
           L+FSAT   + + +M   +L +P  + +   SE  +   Q     +   HKE L+  +LA
Sbjct: 180 LLFSATSGGSALREMTASVLRDPLHLQLNRISELSEGTRQQIITAEDTAHKEKLVHWLLA 239

Query: 247 DAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVT 306
           +  Y++ +IFT TR   DRL  +L    +KA  L G+ +Q  R   + + +    K+LV 
Sbjct: 240 NETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKDQKDRKLAIDRVKEGGVKVLVA 299

Query: 307 TDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVE 366
           TDVA+RGLDI  +  VINFDMP+  +EYVHR+GRTGRAG +G A+SL+   DW     +E
Sbjct: 300 TDVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIE 359

Query: 367 AFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSKKAAPRDK 420
            +L+Q  +  V+ GL+G + G K  +A  KAA  ++    K     KKA P  K
Sbjct: 360 RYLKQRFEHRVVKGLKGSYMGPKNLKASGKAAGPKKKKDDKKKDDKKKAKPTAK 413