Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., ATP-dependent RNA helicase SrmB (RefSeq) from Shewanella amazonensis SB2B

 Score =  279 bits (713), Expect = 2e-79
 Identities = 169/426 (39%), Positives = 233/426 (54%), Gaps = 6/426 (1%)

Query: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
           F+D  LD  LL++L        T IQ+  IPL +  RD+LA + TG+GKT +F+LP L  
Sbjct: 3   FEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQH 62

Query: 67  SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALAR 126
            +         PR L+L PTRELA Q++     +   L     LITGG  +  Q + L  
Sbjct: 63  LIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEMLKS 122

Query: 127 GPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQT 186
               +VATPGRL ++LD      E +E LV+DEADRMLD+GF + ++ I   A  R+ Q 
Sbjct: 123 NVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRK-QA 181

Query: 187 LMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILA 246
           ++FSATL+   V   A ELLNEP  +       E   I Q  +L D  DHK ALL  +L 
Sbjct: 182 MLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLLK 241

Query: 247 DAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVT 306
             E ++ I+F  TR     L  +L Q  +    + G+++Q +R   +G+F +    +L+ 
Sbjct: 242 QEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLLA 301

Query: 307 TDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVE 366
           TDVA+RG+DI  +THVINFDMP+  + YVHR+GRTGRAG KG A+SLV   D     +VE
Sbjct: 302 TDVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKVE 361

Query: 367 AFLQQEIQFEVLAGLEGKFKGLK-PRQAKPKAAPTQRVNKAKAPSKSKKAAPRDKSFYQN 425
            +++Q ++  V+  L  K K  K P + K KA       KAKA +   KAAP       N
Sbjct: 362 RYIEQPLKRRVIEELRPKHKEAKVPTKKKVKAKDA----KAKAKNAKPKAAPGRGPATPN 417

Query: 426 VAVGDS 431
               DS
Sbjct: 418 AKTADS 423