Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., ATP-dependent RNA helicase RhlE (RefSeq) from Shewanella amazonensis SB2B

 Score =  252 bits (643), Expect = 2e-71
 Identities = 151/422 (35%), Positives = 239/422 (56%), Gaps = 14/422 (3%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           + F  LGL   +   L   N++Q TEIQQ+AIP+ ++GR+LLA+++TG+GKT AF LP++
Sbjct: 1   MSFARLGLAPAITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLI 60

Query: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
            +  + K    K  R +IL PTREL  QV   L +    L  T   + GG +   Q +AL
Sbjct: 61  ERLSQGKTERKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQAL 120

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
             G   +VATPGRL D    R+++ E ++ LVLDEADRMLD+GF + +  + +      R
Sbjct: 121 IAGVDILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMP-TNR 179

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
           Q L+FSATL    + ++A   + +P  IAI   S+  K+I+Q     D  D K ALL  +
Sbjct: 180 QNLLFSATLS-PRIRELAKTAVPDPVEIAIAKPSK--KEISQWLVTVDK-DTKSALLSHL 235

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           +   +++Q +IF  T+    +L  +L +  + A A     +Q  R  ++ +F+    + L
Sbjct: 236 IQTEQWQQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYL 295

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           V T VA+RG+D+  +  V+N+D+P   +EY+HR+GRTGRAG  G+A+SL+   D+++   
Sbjct: 296 VATGVAARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKNLCM 355

Query: 365 VEAFLQQEIQFEVLAGLEGKFKGLKP-----RQAKPKAAPTQRVNKAKAPSKSKKAAPRD 419
           +E+ L   I+  V+ G E K    KP        KPK+ P  + +   +P ++ + + + 
Sbjct: 356 IESRLGHVIERRVIEGFEPK----KPIPVSILDYKPKSQPKAQPSSELSPQRNSQPSSQR 411

Query: 420 KS 421
           KS
Sbjct: 412 KS 413