Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  265 bits (676), Expect = 3e-75
 Identities = 159/402 (39%), Positives = 234/402 (58%), Gaps = 6/402 (1%)

Query: 7   FKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHK 66
           F  L L   L + L    F +AT+IQ +AIPL ++G DL+AS++TG+GKT AF LP+L K
Sbjct: 3   FSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPILAK 62

Query: 67  --SLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
              L     S K PR L+LVPTRELA QV+  +       S +A L+ GG +   Q + L
Sbjct: 63  LMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQQL 122

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
           A G   IVATPGRL D     +  L+G+  LV DEADRMLD+GFA E+  +  A     R
Sbjct: 123 AAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELM-ALLPSER 181

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
           QTL+FSATLD   V  ++   L +PKRIA+   +   +D+ Q  Y  D  + K ALL  +
Sbjct: 182 QTLLFSATLDDK-VLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDS-ERKFALLSHL 239

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           +   ++++V++F+  +   D+L  +L +  + A A  G+L Q  R  ++  F R   K+L
Sbjct: 240 INKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVL 299

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           V TDVA+RG+DI ++ +V+N+++P   ++YVHR+GRTGRAG +G A++L   +D    + 
Sbjct: 300 VATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEE 359

Query: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPR-QAKPKAAPTQRVNK 405
           +EA L + +  + L G E       P  +   KAA  +R  +
Sbjct: 360 IEALLDKRLPQQWLPGFEPDLTKADPNPRRNGKAAQKRRAKR 401