Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  246 bits (628), Expect = 1e-69
 Identities = 153/440 (34%), Positives = 240/440 (54%), Gaps = 22/440 (5%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           + F +LGL N +L NL    + Q T IQQ+AIPL + G++L+A+++TGSGKT  FVLPML
Sbjct: 1   MTFANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60

Query: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
              ++ +    K  R +IL PTREL  QV   +     GL   +  + GG +   Q + L
Sbjct: 61  TTLMQGQTQRKKRARAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQL 120

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
             G   +VATPGRL D    R++  + +E LVLDEADRMLD+GF +++ +I +      R
Sbjct: 121 IEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLP-EER 179

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
           Q L+FSATL    V ++A + + +   +++    +   DI Q     D  D K ALL ++
Sbjct: 180 QNLLFSATLSR-PVRELAKQAVPKAIHLSVTKNQDSQPDIEQWITTVDK-DKKSALLSQL 237

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           + D  + Q +IF  T+    +L  +L +  ++A  +     Q  R  I+  F+      L
Sbjct: 238 IKDNAWPQALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYL 297

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           ++T +++RG+DI  +  VIN+D+P   +EYVHR+GRTGRAG KG+A+SLV   D+++   
Sbjct: 298 ISTGISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCM 357

Query: 365 VEAFLQQEIQFEVLAGLEGKFKGLKP---------RQAKPKAAPTQRVNKA------KAP 409
           +E+ L   ++   + G    F   KP          +AK + A  ++ ++A      KAP
Sbjct: 358 IESRLDHLLERREIEG----FAPRKPVPISILNYVPKAKREQAQGEKGSEAAASQGVKAP 413

Query: 410 SKSKKAAPRDKSFYQNVAVG 429
            ++K     DK   Q+ + G
Sbjct: 414 KEAKDKRREDKPRGQSKSQG 433