Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., ATP-dependent RNA helicase SrmB (RefSeq) from Shewanella loihica PV-4

 Score =  274 bits (700), Expect = 5e-78
 Identities = 162/404 (40%), Positives = 229/404 (56%), Gaps = 2/404 (0%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           +QF+D  LD+ LL++L        T IQQQ IPL +  +D+LA + TG+GKT +F+LP L
Sbjct: 14  MQFEDFHLDDTLLESLKAMGHLAPTTIQQQTIPLALEHKDILARAPTGTGKTASFLLPAL 73

Query: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
              L      +   R LIL PTRELA QV+     +  GL     +ITGG  +  Q +AL
Sbjct: 74  QHLLDFPRRYSGQARVLILAPTRELASQVHRYASHLATGLGLDIAIITGGVPYAPQEQAL 133

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
                 +VATPGRL ++LD      + +E LVLDEADRMLD+GF+  ++ I   A+ +R+
Sbjct: 134 KENIDILVATPGRLMEYLDKELFDAQSVEILVLDEADRMLDMGFSSAVQSIAIEAQ-QRK 192

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
             ++FSATL+   V+  A  LL  P  I       E   I Q  +L D  +HK ALL  I
Sbjct: 193 HNMLFSATLEGGGVSRFAEMLLTNPVTIETKPPRSEKAKIHQWMHLADDKEHKFALLCDI 252

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           L   E  + I+F  TR     L  +L Q  +    + G++ Q  R   +G+F +    +L
Sbjct: 253 LKREEVSRAIVFVKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTKGEVNVL 312

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           + TDVA+RG+DI  +THVINFDMP+  + YVHR+GRTGRAGNKG A+SLV   D     +
Sbjct: 313 LATDVAARGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVAK 372

Query: 365 VEAFLQQEIQFEVLAGLEGKFKGLK-PRQAKPKAAPTQRVNKAK 407
           +E +++Q ++  V+  L  K K  K P + K K++  +   KAK
Sbjct: 373 IERYIEQPLKRRVIDSLRPKHKEAKVPTKKKVKSSDKKSPKKAK 416