Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  245 bits (626), Expect = 2e-69
 Identities = 145/412 (35%), Positives = 228/412 (55%), Gaps = 12/412 (2%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           + F  LGL   L K ++   +   + IQ QAIP  + G+D++A+++TG+GKT  F LP+L
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
               K     +   R L+L PTRELA QV   + +    L   + ++ GG   N Q+  L
Sbjct: 61  ELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKL 120

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
             G   +VATPGRL D +   ++    LE LVLDEADRMLD+GF +++++I  A    +R
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKI-LALLPAKR 179

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
           Q LMFSAT    ++ ++A  L+N P  I++   +     + Q     D    K ALL ++
Sbjct: 180 QNLMFSATFSD-EIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDK-TQKSALLIQL 237

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           +    ++QV++F+ T+   +RL + L Q  + A A+ GN +Q  R   +  F+    ++L
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           V TD+A+RGLDI  +  V+NFD+P   E+YVHR+GRTGRAG  G A+SLV  ++ +  K 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357

Query: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAA--PTQRVNKAKAPSKSKK 414
           +E  + + ++ +       + +G  P  A P+    P  +  K KA +  +K
Sbjct: 358 IERLINRVLERQ-------EVEGFSPVHALPETTLNPQGKDTKVKAVANHRK 402