Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  256 bits (654), Expect = 9e-73
 Identities = 152/412 (36%), Positives = 229/412 (55%), Gaps = 6/412 (1%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           + F  L L+ +L+  LA   ++Q T IQ +AIP  +  +D++A ++TG+GKT AF LP+L
Sbjct: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query: 65  HKSLKTKA--FSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVK 122
              +       +AK  R L+LVPTRELA QV         G      +  GG +   Q  
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 123 ALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHR 182
               G   ++ATPGRL DHL   +L L  L TLV DEADRMLD+GF  E++ +       
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVP-A 179

Query: 183 RRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLD 242
           +RQTL+FSATLD + +   +  LL +PKRI +   +     I Q  Y  D  D K   + 
Sbjct: 180 QRQTLLFSATLDDS-IFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDS-DRKTEFVS 237

Query: 243 RILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFK 302
            ++    ++QV+IF+ T+   D+LT +LN+  +   +  G+L+Q  R  ++ +F++ + +
Sbjct: 238 HLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQ 297

Query: 303 ILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESF 362
           +LV TDVA+RGLDI  + +VINF++P   E+Y+HR+GRTGRAG+ G A++L   +D    
Sbjct: 298 VLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLL 357

Query: 363 KRVEAFLQQEIQFEVLAGLEGKFKGLKPR-QAKPKAAPTQRVNKAKAPSKSK 413
           + VE  L + +  +   G E  F  + P  +   KAA  QR  K     K +
Sbjct: 358 EEVETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKKRALGGKKR 409