Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  513 bits (1322), Expect = e-150
 Identities = 268/451 (59%), Positives = 326/451 (72%), Gaps = 10/451 (2%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           +QF D  LD RLL++L H      T IQ+QA+P+ +AG+DL+ASSKTGSGKTLAF+LP L
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
            + + T+A S +DPR LIL+PTRELA QVY +LR ++    Y A  + GGENFNDQ KAL
Sbjct: 61  QRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
           A+ P FIVATPGR+ADHL+ ++LFL GLE L+LDEADRMLDLGFA +L+ I+ AA H+RR
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRR 180

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
           QTLMFSATLDH+++N++A  LL  P  +AIG    EH+DI+Q  YLCDHLDHKEALL R+
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRL 240

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           L+D  ++QVIIFTATRADT+RL  KL+       ALSG L Q  RN IM QF R   +IL
Sbjct: 241 LSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQIL 300

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           VTTDVASRGLD+  V+ VINFDMPK  EEYVHR+GRTGRAG KGDA+SLVGPKDW+SFK+
Sbjct: 301 VTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKK 360

Query: 365 VEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPKAAPTQRVNKAKAPSKSK------KAAP- 417
           V+ FL++  +  V+ GLE KF GLK    KPK+  T+ V KA    KSK      KAAP 
Sbjct: 361 VQLFLRKTFEISVIKGLEAKFTGLKD---KPKSVATKGVVKANTKGKSKPKPNVVKAAPS 417

Query: 418 RDKSFYQNVAVGDSVFIPKKKVAPKPEVDLE 448
           RDK F   V VGD+    K K     E D E
Sbjct: 418 RDKRFITGVDVGDAPMRKKPKAQLLQESDDE 448