Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  251 bits (640), Expect = 4e-71
 Identities = 146/393 (37%), Positives = 236/393 (60%), Gaps = 4/393 (1%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           ++F+       +L+ ++   +++ T IQQQAIP    G+D+LAS++TG+GKT AF LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 65  HKSLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKA 123
            K ++  + + K + R LIL PTRELA QV   + +    L+++   I GG     Q + 
Sbjct: 61  QKMVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 124 LARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRR 183
           L RG   IVATPGRL +HL   +L L  ++ LVLDEADRMLD+GF+ ++++I  A  +++
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAV-NKK 179

Query: 184 RQTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDR 243
           RQ L+FSAT   A V  +A E++ +P+ I+    +     ++Q  Y  +    +E LL  
Sbjct: 180 RQNLLFSATFSSA-VKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRE-LLSE 237

Query: 244 ILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKI 303
           ++    ++QV++FTATR   D L ++LN + + +  + G   Q  R   + +F     ++
Sbjct: 238 LIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRV 297

Query: 304 LVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFK 363
           LV T+VA+RGLDIP++ +V+NFD+P   E+YVHR+GRTGRAG  G A+S V  ++  +  
Sbjct: 298 LVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLA 357

Query: 364 RVEAFLQQEIQFEVLAGLEGKFKGLKPRQAKPK 396
            +E  + Q+I+   + G E   + L  +Q + +
Sbjct: 358 DIEKLIGQKIRRITVPGYEVGSRDLLLKQLQTR 390