Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., ATP-dependent RNA helicase SrmB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  261 bits (667), Expect = 3e-74
 Identities = 152/421 (36%), Positives = 238/421 (56%), Gaps = 5/421 (1%)

Query: 5   LQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPML 64
           +QF+D  LD  LL++L        T IQQ+ +P  +  RD+LA + TG+GKT +F+LP L
Sbjct: 1   MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL 60

Query: 65  HKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
              +      +   R LIL PTRELA Q++     +         +ITGG  +  Q +AL
Sbjct: 61  QHLIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
                 +VATPGRL ++LD      E ++ L++DEADRMLD+GF+  ++ I   A+ R+ 
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRK- 179

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
           Q ++FSATL+ + V   A E+LN+P  I +    +E   I Q  +L D  DHK ALL  +
Sbjct: 180 QNMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHL 239

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           L   + ++ I+F  TR     L  +L Q  +    + G++ Q +R   + +F +    +L
Sbjct: 240 LKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVL 299

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           + TDVA+RG+DI  ++HVINFDMP+  + Y+HR+GRTGRAG KG A+SL    D     +
Sbjct: 300 LATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGK 359

Query: 365 VEAFLQQEIQFEVLAGLEGKFKGLK---PRQAKPKA-APTQRVNKAKAPSKSKKAAPRDK 420
           +E +++Q ++  ++  L  K K  +    ++AK KA    ++ +K +A  K+ K A + +
Sbjct: 360 IERYIEQPLKRRIIEELRPKHKEARVPTKKKAKVKAKEAAKKTSKKEAAKKASKIARKKQ 419

Query: 421 S 421
           S
Sbjct: 420 S 420