Pairwise Alignments

Query, 452 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., Superfamily II DNA and RNA helicases from Sphingomonas koreensis DSMZ 15582

 Score =  243 bits (620), Expect = 1e-68
 Identities = 142/369 (38%), Positives = 209/369 (56%), Gaps = 4/369 (1%)

Query: 6   QFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLH 65
           QF  LGL    L  LA   +  AT IQ Q+IP  + GRDLL  ++TG+GKT AF+LP + 
Sbjct: 19  QFNTLGLSETTLAALAAKGYTTATPIQAQSIPALLEGRDLLGIAQTGTGKTAAFMLPSID 78

Query: 66  KSLKT-KAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKAL 124
           + + + K    +  R L+L PTRELA Q+    R    G   +   + GG + +     L
Sbjct: 79  RLIASGKRAQPRGCRMLVLAPTRELASQIAESARQYSKGTKLSVATVFGGTSIHKNKTDL 138

Query: 125 ARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRR 184
           ARG   +VATPGRL D +D     L G+E LVLDEAD+M+DLGF   L+RI      +R 
Sbjct: 139 ARGVDIVVATPGRLVDLIDQCYAILLGIEILVLDEADQMMDLGFIHALKRIVRELPSKR- 197

Query: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRI 244
           QTL FSAT+  + + D+A + ++EP  + +   +   + + Q F        K++LL   
Sbjct: 198 QTLFFSATMPKS-IRDLANQFIHEPVEVKVTPVATTAERVEQ-FVTHVSQSEKQSLLTIK 255

Query: 245 LADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKIL 304
           L D    + +IFT T+   DR+ + L  + + A A+ GN +Q QR   +G+F     K+L
Sbjct: 256 LRDESIDRALIFTRTKHGADRVVKLLAASGIAANAIHGNKSQPQRERALGEFRSGKVKLL 315

Query: 305 VTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKR 364
           V TD+A+RG+D+  V+HV NF++P   E+YVHR+GRT RAGN G A+S     +    + 
Sbjct: 316 VATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGNDGVAISFCADDEKAYLRD 375

Query: 365 VEAFLQQEI 373
           +E   +Q++
Sbjct: 376 IERLTRQKL 384