Pairwise Alignments

Query, 306 a.a., peptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (582), Expect = 1e-64
 Identities = 124/289 (42%), Positives = 178/289 (61%), Gaps = 10/289 (3%)

Query: 15  SWSINAAVFDLPIEGSSIVGNTQYHKVEKGE-TLADIAKKYDIGFLALMAANRGVDPFLP 73
           S S  A  + LP   S +VG   Y+ V +G+ TL DIA ++ +G   L+ AN GVDPFLP
Sbjct: 17  SLSALATEYPLPSPKSRLVGENLYYTVPEGKHTLEDIAAQFQLGLSNLLEANPGVDPFLP 76

Query: 74  QEGFVISIPAKIILPKVAYEGIVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPV-MQ 132
           + G  + IP ++ILP    EGIVIN+AE+RLYY+   +  V + P+GIG+IG+DTP    
Sbjct: 77  KPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWV 136

Query: 133 TSISSKRKYPTWTPPASIRKEYKAKGIDLPPVVPAGPENPLGDYAMRLAYGSGEYLIHGT 192
           TS+  KR  PTWTP   IRKEY A+G  LP V PAGP+NP+G YA+   Y    Y IHGT
Sbjct: 137 TSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLYAL---YIGNLYAIHGT 193

Query: 193 NKDFGVGMRVSAGCIRMDPKDIEWLYQQVERGEKVRIINEPIKVALEPDRSVFIEVHEPL 252
           N  FG+G+RVS GC+R+   DIE L++ V  G +V+ +N+PIK   EPD   ++ VH+PL
Sbjct: 194 NASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATEEPDGKRYLAVHQPL 253

Query: 253 TRS-----NGVKKNLVVPEELSWWLQEHKISDAKARAAVLAQNGVPVEI 296
           +R+     +     L +P++++ ++ +     +  +  +  + GVP  I
Sbjct: 254 SRTIAEFESNEPVALSLPKDIAKFIAKADTDSSMIKKLLDERTGVPAII 302