Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., Deoxyribodipyrimidine photolyase (EC 4.1.99.3) from Pseudomonas fluorescens FW300-N2E2

 Score =  368 bits (944), Expect = e-106
 Identities = 202/477 (42%), Positives = 275/477 (57%), Gaps = 21/477 (4%)

Query: 1   MRLVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQ 60
           M+L+W R DLR  DNTALTAA   G P  A+Y+ +PEQW  H  AP + D   R L+ L 
Sbjct: 1   MQLIWLRSDLRLHDNTALTAAAAQG-PCVAVYLTSPEQWRAHDDAPCKIDFWLRNLSALS 59

Query: 61  QELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSE 120
             LA LN+PL  +  A +  A   + +L + LN   V  N +Y L+E +RD    + L++
Sbjct: 60  AALAELNIPLLIRAAAHWHQAPQVLLKLCRELNVDAVHVNEEYGLNETRRDAEVARTLND 119

Query: 121 QGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLT--------LFQPPVIGKNRPV 172
           QG+ + +  D+ +  PGSV TK G +F+VF+ F++   +        L   P    +  +
Sbjct: 120 QGVEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHLSLPSLVATPARQASTGI 179

Query: 173 ALWNVPSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPA 232
           A   VP+ +      P +A          W A     R +L  F  + + DY   RD+PA
Sbjct: 180 ARDPVPTQVDGFA-PPSEAL------RALWPAGETEARRRLDTFVDQHIDDYQGERDYPA 232

Query: 233 REGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEG---AQVWLSELIWREFYQHLVAI 289
           R GTS LS YL  GV+S RQC+     +++ GE   G   A  W++EL+WREFY+H++  
Sbjct: 233 RPGTSQLSAYLVAGVVSPRQCLHAAL-QANQGEFESGNAGAVTWINELLWREFYKHILVG 291

Query: 290 EPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIV 349
            P +S+ R F      L W     + + W + +TG PI+DAAMRQ+ +TGWMHNRLRM+V
Sbjct: 292 YPRVSRHRAFRPETEALAWRKAPAELEAWKQARTGLPIIDAAMRQMLETGWMHNRLRMVV 351

Query: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409
           A FLTK+L IDWR GER+FM  LIDGD AANNGGWQW ASTG D  P+FRIFNP+SQ EK
Sbjct: 352 AMFLTKNLLIDWREGERFFMQHLIDGDLAANNGGWQWSASTGTDSAPWFRIFNPLSQSEK 411

Query: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAV-NSVLYPARLVDHKQEREVTLRLYK 465
           FD  G FI+ W+PEL  +    +H P T   +  +V YPA +VD  Q R   L  ++
Sbjct: 412 FDREGLFIKHWLPELNDLDRQQVHSPNTQGGLFGAVDYPAPIVDLSQSRARALAAFR 468