Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., Deoxyribodipyrimidine photolyase from Pseudomonas stutzeri RCH2

 Score =  379 bits (973), Expect = e-109
 Identities = 206/475 (43%), Positives = 288/475 (60%), Gaps = 19/475 (4%)

Query: 2   RLVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQ 61
           +L W R DLR+ DN+ALT+A+ +G P  A+Y+ TP QW  H  AP + D   R L EL  
Sbjct: 3   QLFWLRNDLRTSDNSALTSAMAAG-PTVAIYLITPGQWLAHDDAPCKVDFWLRNLVELSA 61

Query: 62  ELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQ 121
           +L ALNVPL  ++V D+Q+   A+ +L + L+   +  N +Y ++E++RD+     L   
Sbjct: 62  QLRALNVPLLIREVDDWQSVPAALLKLCQELDVHGLHYNEEYGVNERRRDRTVAATLGAC 121

Query: 122 GIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQ---PPVIGKNR-----PVA 173
           G++     D+ +  PG+V T+ G  FKVF+ F++  L+      PP +G        P+A
Sbjct: 122 GVLVRGHVDQVLFAPGTVLTQSGGHFKVFSQFRKQCLSRLAVSLPPCVGVPAAQAPLPIA 181

Query: 174 LWNVPSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAR 233
              VP+A+A       +  DY R     W A     + +L  F  + +  YH+ RD PA 
Sbjct: 182 SDPVPTAVAGF----PRPTDYLR---ALWPAGEAFAQRRLALFVEDDLDLYHERRDLPAE 234

Query: 234 EGTSSLSPYLAIGVLSARQCV--ARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEP 291
            GTS LS YLA GV+S RQC+  A  Y++  +   S GA  W++EL+WREFY+H++   P
Sbjct: 235 PGTSQLSAYLAAGVISVRQCLHAALGYNQGELDSGSTGATTWINELLWREFYKHVLDGHP 294

Query: 292 NLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
            LS  R F      L W +   + + W +G+TG+PIVDAAMRQL +TGWMHNRLRM+VA 
Sbjct: 295 RLSMHRAFRSETDALPWRHAPYELEAWQQGRTGFPIVDAAMRQLQETGWMHNRLRMVVAM 354

Query: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
           FL+K+L IDWR GER+FM  LIDGD AANNGGWQW ASTG D  PYFR+FNP+SQ ++FD
Sbjct: 355 FLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFD 414

Query: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVL-YPARLVDHKQEREVTLRLYK 465
           P+G F+RRW+PEL+ +    IH P  + ++  V  YPA +VD    R   L  ++
Sbjct: 415 PSGQFLRRWLPELQHLDKRDIHDPSAHRSLFGVTEYPAPIVDLGASRARALATFR 469