Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., deoxyribodipyrimidine photo-lyase, 8-HDF type from Synechocystis sp000284455 PCC 6803

 Score =  288 bits (736), Expect = 4e-82
 Identities = 181/478 (37%), Positives = 243/478 (50%), Gaps = 21/478 (4%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
           L+W RRDLR  D+ AL  A      +  ++    +      +AP +   +   L  LQ  
Sbjct: 20  LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAEDMAPARVAYLLGCLQSLQDH 79

Query: 63  LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQG 122
              L   L   Q    Q     + +LA TL A  V    D E   Q+RD    Q L E+G
Sbjct: 80  YQRLGSELLVFQADPVQL----LPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRERG 135

Query: 123 IIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPSALA 182
           +  +   D+ +  PG V T+ G  + V+TPF + W  L  P       P  L  +  A  
Sbjct: 136 LAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQL--PKTSPVPTPKDLQGLTPAEK 193

Query: 183 ELVWHPEQAFDYPRI--------DSTPWAADFETVRAQLRDFCRERVQDYHQARDFPARE 234
           E +  P +    P++           P     E    +L  F    +++Y Q R+FPA +
Sbjct: 194 EKL-APLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPALD 252

Query: 235 GTSSLSPYLAIGVLSAR---QCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEP 291
           GTS LS  L  GV+S R   Q     + +S   E     + W  EL WREFYQH +   P
Sbjct: 253 GTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYSFP 312

Query: 292 NLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
            L++   +        W  + + FQ WCEG+TGYPI+DAAM QLNQTGWMHNR RMIVAS
Sbjct: 313 ALAQG-PYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVAS 371

Query: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
           FL KDL ++W+WGE YFM  L DGD AANNGGWQW AS+G D +P  RIFNP +Q +KFD
Sbjct: 372 FLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPHTQAQKFD 430

Query: 412 PNGDFIRRWVPEL-RSVSSAYIHQPWTYPAVNSVLYPARLVDHKQEREVTLRLYKTAK 468
           P G++IR W+P+L R  +   +    T  +  SV YP  +VDH Q++    R Y+  K
Sbjct: 431 PEGEYIRTWLPQLARFDTGDLLTGKLTPGSRRSVNYPEPIVDHNQQQREFKRRYQLVK 488