Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., deoxyribodipyrimidine photo-lyase (RefSeq) from Shewanella amazonensis SB2B

 Score =  391 bits (1005), Expect = e-113
 Identities = 217/473 (45%), Positives = 286/473 (60%), Gaps = 32/473 (6%)

Query: 3   LVWFRRDLRSFDNTALTAALNS----GDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAE 58
           LVWFR+DLR+ DN ALT A       G  V A++IA+P QW +H +   Q   +   L  
Sbjct: 4   LVWFRQDLRTIDNQALTRACEDANARGGKVHALFIASPGQWQRHDMGVRQQRFLLANLNA 63

Query: 59  LQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLL 118
           L +ELA++ +PL   +V  F   A A+    K    + + A    E+DE++RDQ     L
Sbjct: 64  LGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEIDERRRDQA----L 119

Query: 119 SEQGIIWSAFDDKCVLPPGSV-----RTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVA 173
            ++G      D+ C+LPPGSV     R + G  ++VFTPF R W        I  +R  +
Sbjct: 120 LDKGFPLQLTDEHCMLPPGSVVTQGQRDQGGAMYRVFTPFARRWRE------IAASR--S 171

Query: 174 LWNVPS--ALAELVWHPEQAF-----DYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQ 226
           LW +P+  ++A  V     AF     D P +D   W    +    +L  F    +  Y +
Sbjct: 172 LWPIPAPASVATPVVFTPFAFWGDINDDPALDK--WPVGQDAALEKLSRFRELGMGRYGE 229

Query: 227 ARDFPAREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEG--AQVWLSELIWREFYQ 284
            RDFPA +GTSSLSPYLA+GV+S RQC+A L  +     ++E   A+ WL+EL+WREFY+
Sbjct: 230 NRDFPAIDGTSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLNELVWREFYR 289

Query: 285 HLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNR 344
           HL+   P LS +++F   G  + W ND  +F+ W  G+TGYP+VDAAMRQLNQTGWMHNR
Sbjct: 290 HLLVAFPGLSMAKNFNPLGDGIRWRNDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNR 349

Query: 345 LRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPV 404
           LRM+VASFLTK L IDWRWGERYF  +LIDG  AANNGGWQW A TGCD QPYFRIFNP+
Sbjct: 350 LRMVVASFLTKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPM 409

Query: 405 SQGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARLVDHKQER 457
           SQ EKFDP G FIR+++PEL    +  +HQ       +S  YP+ +V+H Q R
Sbjct: 410 SQSEKFDPEGRFIRKYLPELAQWPTRSLHQASGPGLFDSSGYPSPIVEHTQAR 462