Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., Deoxyribodipyrimidine photolyase (NCBI) from Rhodospirillum rubrum S1H

 Score =  270 bits (689), Expect = 1e-76
 Identities = 181/473 (38%), Positives = 231/473 (48%), Gaps = 30/473 (6%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIW---RRLAEL 59
           LVWFR DLR  DN AL AAL+SG PV   Y+        H   P+     W   R L  L
Sbjct: 6   LVWFRDDLRLADNPALCAALDSGAPVIPFYLLDDSTSDGHR--PLGGATRWWLGRSLTSL 63

Query: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLS 119
            + +A     L  ++      A  AV +LA   +A  + ANR Y +D  + D L   +L 
Sbjct: 64  AESIAQRGGRLVLRR----GEALSAVPELAAETDAAALFANRLYGMDSLRDDDLFM-VLR 118

Query: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQP--PVIGKNRPVALWNV 177
             G+    FD   +  P +V TK G  F+VFTPF +       P  P+   +    + + 
Sbjct: 119 VAGLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFWKTLSATLDPGLPLAAPDSFPPVDDP 178

Query: 178 PSALAELV-WHPEQAF-DYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREG 235
           P A   L  W  E    D+       W       +A+L  F    V DY   RD P +  
Sbjct: 179 PPASDSLADWSLEPTTPDWAGGLRDTWQPGEAGAQARLEAFFNGPVADYASGRDRPDKPL 238

Query: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
           TS LSP+L  G +S RQ      H    G    G   +L EL WREF  HL+   P +++
Sbjct: 239 TSKLSPHLRFGEISPRQVWTAARHHPPGG----GMDAFLRELGWREFCHHLLFQAPTMAE 294

Query: 296 SRDFVEWGARLEWWNDNE---KFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 352
                E+ A   W    E       W  G+TGYPIVDA MR+L  TGWMHNR+RMI ASF
Sbjct: 295 EPLKAEFLA-FPWTEAKEIGPALAAWQSGETGYPIVDAGMRELWHTGWMHNRVRMIAASF 353

Query: 353 LTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDP 412
           L KDL I W+ GER+F   L+D   A N  GWQW A  G D  P+FRIFNPV+QGE+FDP
Sbjct: 354 LIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVTQGERFDP 413

Query: 413 NGDFIRRWVPELRSVSSAYIHQPWTYP--------AVNSVLYPARLVDHKQER 457
            G ++RRW+PEL  + S+ IH+PW  P              YP  L+DH   R
Sbjct: 414 EGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHAR 466