Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., deoxyribodipyrimidine photo-lyase from Rhodopseudomonas palustris CGA009

 Score =  263 bits (671), Expect = 1e-74
 Identities = 175/475 (36%), Positives = 238/475 (50%), Gaps = 21/475 (4%)

Query: 3   LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
           +VWFR DLR  D+ AL AA  SG PV  +Y+          L       + + L  L+ E
Sbjct: 11  IVWFRDDLRLADHPALHAAAQSGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALESE 70

Query: 63  LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANR-DYELDEQQRDQLAQQLLSEQ 121
           L AL   L  ++       A  +++LA+  +A  V  N  +        D LA  L +  
Sbjct: 71  LRALGGALILRR----GPTAAVLAELAQQHDAAAVHWNEIEIAAHRAVADALADAL-TVA 125

Query: 122 GIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPSAL 181
           GI +       ++ P ++R+K G   +VFTPF R  L+L  PP     RP  L   P+  
Sbjct: 126 GIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSLGDPPQ-PLPRPTTLRPAPAVP 184

Query: 182 AELV--WHPEQ-AFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238
            E +  W  E  A D+       W       + +L  F   +   Y + RD+P R  TS 
Sbjct: 185 TEQLSDWQLEPTAPDWAGGLRQTWTPGEAAAQTRLAAFLAMQ-PGYAEGRDYPDRHITSG 243

Query: 239 LSPYLAIGVLSARQC-VARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297
           LSP+L  G +S RQ   A  +  +    ++     +LSE+ WREF +HL+   P+L+ SR
Sbjct: 244 LSPHLRFGEISPRQVWYAARFAAAERPAIAPDIDKFLSEVGWREFCRHLLFDHPDLA-SR 302

Query: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357
           +         W +D+     W  G+TGYPIVDA MR+L  +G MHNR+RM+V SFL K L
Sbjct: 303 NLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLVKHL 362

Query: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417
            IDWR GE++F   L+D D  +N G WQW A  G D  PYFR+FNPV Q EKFD  G +I
Sbjct: 363 LIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGGAYI 422

Query: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--------YPARLVDHKQEREVTLRLY 464
           RRWVPEL  + +  IHQPWT   +            YP  +VDHK  R+  L  Y
Sbjct: 423 RRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVDHKTGRQRALSAY 477