Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., deoxyribodipyrimidine photolyase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  417 bits (1073), Expect = e-121
 Identities = 235/503 (46%), Positives = 303/503 (60%), Gaps = 42/503 (8%)

Query: 3   LVWFRRDLRSFDNTALTAALN-----SGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLA 57
           L+WFR+DLR  DN A TAA +         + A+YIATP QWHQH +APIQ D I R + 
Sbjct: 13  LMWFRQDLRLTDNQAFTAACDWVRQHHAAKLKAIYIATPSQWHQHDIAPIQLDFIQRHVN 72

Query: 58  ELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQL 117
            L Q L +L V     Q+  F+     ++   +  +  +V A ++ E++EQ+RDQ     
Sbjct: 73  LLAQGLVSLGVEFELIQLDSFRDIPAFLTSYCEEHSIGRVFAGQEPEINEQKRDQACV-- 130

Query: 118 LSEQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAW---------LTLFQPPVIG- 167
             E GI  S  D+ C+LPPG+V    G+ ++VFTPF R W         L L  P  +G 
Sbjct: 131 --EAGIPLSLSDEHCLLPPGTVLNLSGDMYRVFTPFSRKWREVAAKQAILPLGVPAPLGS 188

Query: 168 ---KNRPVALWNVPS---ALAELVWHPEQAFDY----PRIDSTPWAADFETVRAQLRDFC 217
              + +P+   N+ S   A ++ +   ++ F+     P I S  WAA     +  L  F 
Sbjct: 189 ILSEPKPLFFKNIGSTYLAASKDIASSKKGFNQTAPNPLISSEQWAAGEGQAKRLLNQFI 248

Query: 218 RERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQCVARL---YHESSMGELSEGAQVWL 274
           +++VQDY Q RDFPA +GTS +SPYLAIGVLS RQCVA L   + E  + + S G + WL
Sbjct: 249 QQKVQDYKQDRDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVIVDDTSPG-RTWL 307

Query: 275 SELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQ 334
           +ELIWREFY+HL+   P+LSK  +F      + W N+  +F  WCEGKTGYPIVDAAMRQ
Sbjct: 308 NELIWREFYRHLLVAFPDLSKGNNFNRQADHVLWRNNQSEFLAWCEGKTGYPIVDAAMRQ 367

Query: 335 LNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDG 394
           LNQTGWMHNRLRM+VASFLTK L IDWRWGERYF   LIDGD AANNGGWQW A  GCD 
Sbjct: 368 LNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDA 427

Query: 395 QPYFRIFNPVSQGEKFDPNGDFIRRWVPELRSVSSAYIHQP--WTYPAV-------NSVL 445
           QPYFRIFNP+SQ EKFDP+G FIR+++PEL S     +HQP     P++       +   
Sbjct: 428 QPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLFEAPLFASQAD 487

Query: 446 YPARLVDHKQEREVTLRLYKTAK 468
           YP  +V+H   R   L +    K
Sbjct: 488 YPNAIVEHNAARARALTVLGVLK 510