Pairwise Alignments

Query, 469 a.a., deoxyribodipyrimidine photo-lyase from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., deoxyribodipyrimidine photo-lyase type I (RefSeq) from Shewanella sp. ANA-3

 Score =  423 bits (1087), Expect = e-123
 Identities = 231/490 (47%), Positives = 295/490 (60%), Gaps = 35/490 (7%)

Query: 3   LVWFRRDLRSFDNTALTAALN-----SGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLA 57
           L+WFR+DLR  DN ALTAA +      G  + A+YIATP QW  H +APIQ D I R + 
Sbjct: 13  LMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPNQWLSHDMAPIQIDFIQRHVN 72

Query: 58  ELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQL 117
            L Q LA+L +     Q+  F+     ++   + L   +V A R+ E++EQ+RDQ     
Sbjct: 73  LLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKRDQACL-- 130

Query: 118 LSEQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNV 177
             + GI     D+ C+LPPG+V    G+ +KVFTPF R W        I   R +    V
Sbjct: 131 --DTGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWRE------IAAKRAIFPLAV 182

Query: 178 PSALAELVWHPEQAFDYPRIDSTP-------WAADFETVRAQLRDFCRERVQDYHQARDF 230
           P+ L  ++  P+      R  ST        WAA     +  L  F +++VQDY Q RDF
Sbjct: 183 PAPLGPMLPEPKPISFKERFQSTSKLTSSEQWAAGEGQAKRILTAFIKQKVQDYKQDRDF 242

Query: 231 PAREGTSSLSPYLAIGVLSARQCVARL---YHESSMGELSEGAQVWLSELIWREFYQHLV 287
           PA +GTS +SPYLA+GVLS RQC+A L   + +  + + S G + WL+ELIWREFY+HL+
Sbjct: 243 PALDGTSVISPYLALGVLSPRQCIAALLGRFPDVIVDDTSPG-RTWLNELIWREFYRHLL 301

Query: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
              P+LSK  +F      ++W N+  +F  WCEGKTGYPIVDAAMRQLNQTGWMHNRLRM
Sbjct: 302 VAFPDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 361

Query: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
           +VASFLTK L IDWRWGERYF   LIDGD AANNGGWQW A  GCD QPYFRIFNP+SQ 
Sbjct: 362 VVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQS 421

Query: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQP--------WTYPAVNS-VLYPARLVDHKQERE 458
           EKFDP+G FIR+++PEL S     +HQP        +  P + S   YP  +V+H   R 
Sbjct: 422 EKFDPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEAPMLESDSAYPCAIVEHNAARA 481

Query: 459 VTLRLYKTAK 468
             L +    K
Sbjct: 482 RALAVLGVLK 491