Pairwise Alignments

Query, 526 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.4 bits (246), Expect = 4e-25
 Identities = 111/449 (24%), Positives = 195/449 (43%), Gaps = 46/449 (10%)

Query: 95  HGEYVAALSEYVAISNIAVEHGMIDDYVLAVLGMGNLCDAYGDHSRALRYYQ------KI 148
           +G+  +A+  Y  +  + +++G  +     +  +G   D  G H +A+ +++      K 
Sbjct: 202 YGDPESAIKYYKKLKELYLKNGNKEQVANVMSEIGIALDEMGKHEQAIEHFRFSYQYFKD 261

Query: 149 DSIDHAISSRSLRLRYKLYMLACYISLGRYAAANDLIKECDELSILVSDKLLTGQIMLYQ 208
             ++   +  +  + Y L      I L R   A + + E     I  ++      + L+ 
Sbjct: 262 QKLNIVAAINATNIAYSL------IQLNRLDEAENYLNEAAP-DISENEPAAYSFMKLFM 314

Query: 209 AKLYLQQGKVQKAMMTLANAQYSSSLTPSDWLSSMLRIELAHCLSKAGKAHFATMLLGST 268
            K+  QQG+ Q+A+  L+ A+++  +  +D         L   L      + A   L   
Sbjct: 315 GKIRNQQGRYQEALDELSAAEHAFRVMHNDR-------GLIQLLQLKSDIYAAMEDLPQA 367

Query: 269 EKRLQNIHSPFLEKRLYEAF--SEVCELEGMYKTALVYEKKAFRIESDLMKRIPISELGP 326
              LQ   +  L K++ ++    +  EL+  + T+ +  +    I++  +K     EL  
Sbjct: 368 YHILQEFIA--LTKKVDDSSIAHQTTELKVKFDTSWIESENKRLIDNQKLKE---QELTL 422

Query: 327 IQLRRLSRFELQLKLILSE---LENRELKETTESQKNTVLQLQQDVFTDPLTKLHNRRWL 383
           ++  +     LQL ++L     L    L    +  +N   QLQ    TD LT+L NRR +
Sbjct: 423 LEKNK----SLQLIILLLTGCILATVSLFAYKQVHRNR--QLQTIALTDYLTQLPNRRHI 476

Query: 384 DVKLKDL----LLHETPFAFLVVDIDHFKSINDELSHLVGDKAIVNVSSELASYFKFRGA 439
             + +      L  + PF+ ++ D DHFK IND   H +GD+A++ ++    +    R  
Sbjct: 477 YAQAEQYFQLALKQQIPFSIIIFDADHFKKINDNFGHEIGDQALLTIAEASKTLTTDRNL 536

Query: 440 SCVRFGGEEFLVILENVTSDMAQMHAETYRQRIFDFPWQDVLGERGLTVSIGITL----- 494
              R GGEEFL++L N  +D A   A   +  I  F   ++  E  LTVS G+       
Sbjct: 537 -VGRIGGEEFLILLPNTDADRAWKLAHELQTLITRFGAINLPVELKLTVSAGVATLPIQS 595

Query: 495 HREGENTQRTFYRADKALYRAKANGRNQV 523
             + +N  R   RAD ALY AK  GRN V
Sbjct: 596 ELQDQNFARLLKRADNALYEAKNAGRNCV 624