Pairwise Alignments

Query, 526 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (248), Expect = 1e-25
 Identities = 72/200 (36%), Positives = 104/200 (52%), Gaps = 14/200 (7%)

Query: 336 ELQLKLILSELENRELK---ETTESQKNTVLQLQQDVFTDPLTKLHNRRWLDVKLKDLLL 392
           E+Q  L+ ++   + L    +  ++ K  +  L     TD LT LHNRR  ++ ++D + 
Sbjct: 120 EMQNLLVNNQTMEQSLNAMGQEVQNLKTEMENLSLAAMTDQLTSLHNRRAYEIAIQDHIH 179

Query: 393 H----ETPFAFLVVDIDHFKSINDELSHLVGDKAIVNVSSELASYFKFRGASCV-RFGGE 447
                 T  + L++DID FK  ND   H VGDK +  V+  L      RG   V R+GGE
Sbjct: 180 RAEEQHTRCSLLLIDIDRFKVFNDTYGHQVGDKVLAYVALALKQCV--RGDDFVARYGGE 237

Query: 448 EFLVILENVTSDMAQMHAETYRQRIFD----FPWQDVLGERGLTVSIGITLHREGENTQR 503
           EF+V+L N     A   AET R RI +          L    +TVSIG+   ++G++ + 
Sbjct: 238 EFVVLLPNTHFHDALQVAETLRGRISERRLAIGKDKKLSLGAITVSIGLASLQKGDDAET 297

Query: 504 TFYRADKALYRAKANGRNQV 523
            F RADKALY AK++GRN V
Sbjct: 298 LFSRADKALYEAKSDGRNCV 317