Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  378 bits (971), Expect = e-109
 Identities = 190/377 (50%), Positives = 264/377 (70%), Gaps = 4/377 (1%)

Query: 1   MDLLLILTYTALCVAVFKVFKIPLNKWTVPTAVLGGVILIGTLILLMNYNHPFTQLGSQV 60
           MDLLLILTY A+CV +FKVFKIPLNKWTVPTAVLGG++L+GTL+LLMNYNHP+++   + 
Sbjct: 1   MDLLLILTYAAICVVIFKVFKIPLNKWTVPTAVLGGIVLLGTLLLLMNYNHPYSRFAREY 60

Query: 61  YSTTPIVSGVRGRVVEVPVKPNQPLTQGDVLFRIDPIPFEADVARLKAKVKEASQGALGL 120
           + T PI   V G+VVEV V PN P+ +G+VLFR+DP PFE+ + + +A +K A Q    L
Sbjct: 61  FVTVPINPLVTGKVVEVAVMPNVPIREGEVLFRLDPRPFESALIQKQAALKAAEQEVPQL 120

Query: 121 ESTLKEAQAAVLKAIAERDKAQREYDRYQRGYQRGA----FTEQQMDTTRQTYKAAQAAL 176
           E+  + A+A+V +A A+RD+++ EY+RY+ G ++G     FT  ++D  RQ Y AA+A L
Sbjct: 121 EAAWETARASVERAQADRDRSKSEYERYEAGRRKGGANSPFTALELDNKRQLYFAAEAQL 180

Query: 177 EVAQSKQEQAQIALDSEVGGENTTVAQLLAELRKAEFDLEQTIVRAPTDGYVTQLALRPG 236
             A++++ + + A +S + G NT VA   AE+ KAEFDLEQ++VRAPTDG VT +ALRPG
Sbjct: 181 TAARAEEMRVRYAYESNIDGVNTKVAAARAEVAKAEFDLEQSVVRAPTDGVVTHMALRPG 240

Query: 237 MMSVPLPLAPVMTFVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRALPGKVFKGEVIEVL 296
           M+ VP+PL PVM+F+  E++ +  AF QNS+ RL+ G  AE +  A PG+VFKG V  VL
Sbjct: 241 MVVVPMPLRPVMSFIPNEQRYFVGAFWQNSMLRLKAGDQAEVILDAAPGQVFKGRVARVL 300

Query: 297 PAIGESQIQARGALLGTDALRTSGRVFVTLRITDDLSQYHLPMGSAVEVAVYSDSFEHVS 356
           PA+ E ++QA G L  +  +   GRV V +           P G A +VA+Y+D F HV+
Sbjct: 301 PAMAEGEVQANGQLQSSARMFQRGRVLVMIEFDRSDEIQAFPAGVAGQVAIYTDHFSHVA 360

Query: 357 IMRKVLIRMKSWQNYLY 373
           +MRKVL+RM+ W NYL+
Sbjct: 361 VMRKVLLRMQGWLNYLF 377