Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., multidrug resistance efflux pump (RefSeq) from Shewanella amazonensis SB2B

 Score =  120 bits (300), Expect = 8e-32
 Identities = 89/286 (31%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 66  IVSGVRGRVVEVPVKPNQPLTQGDVLFRIDPIPFEADVARLKAKVKEASQGALGLESTLK 125
           I   V G +V+V V  ++ +  G++LF ID   ++    + +A ++   Q      + ++
Sbjct: 48  ITPEVAGNIVQVNVDNDKRVEAGELLFEIDATQYQIAREKAQADLERVGQSLGASTAAVQ 107

Query: 126 EAQAAVLKAIAERDKAQREYDRYQRGYQRGAFTEQQMDTTRQTYKAAQAALEVAQSKQEQ 185
            AQA V  A A  D A+ +  R +   +RG  ++ ++D  R+  + AQA+LE AQ+   Q
Sbjct: 108 VAQAKVGDARAALDNAKAQATRVETLAERGVLSQAELDNAREAAQRAQASLEAAQASLLQ 167

Query: 186 AQIALDSEVGGENTTVAQLLAELRKAEFDLEQTIVRAPTDGYVTQLALRPGMMSVPLPLA 245
           A+  L   VG  N  +   +A L KAE DL++T V AP+ G VT + L PG      P  
Sbjct: 168 AKQNL-GPVGENNPELKAAMAALAKAELDLKRTRVVAPSRGVVTNVQLSPGQYMA--PGQ 224

Query: 246 PVMTFVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRALPGKVFKGEVIEVLPAIGESQ-- 303
           P +TF+   E   +A  R+NSL+ ++ G     +F ALPG+VF+G V  +    G +   
Sbjct: 225 PALTFIDPREVWISAMMRENSLEHIREGGKVGLVFDALPGRVFEGVVDSIGWGSGGANNI 284

Query: 304 IQARGALLGTDALRTSGRVFVTLRITDDLSQYHLPMGSAVEVAVYS 349
            Q  G        + + R  V +R         L  GS V VA Y+
Sbjct: 285 DQTTGFETAQTGKQQAKRFPVHIRFDTAPMANELRFGSQVTVAFYT 330