Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

 Score =  109 bits (273), Expect = 1e-28
 Identities = 100/350 (28%), Positives = 161/350 (46%), Gaps = 13/350 (3%)

Query: 29  VPTAVLGGVILIGTLILLMNYNHPFTQLGSQVYSTTPIVSGVRGRVVEVPVKPNQPLTQG 88
           V  A +G ++L G   L+ +   P T       + T +   V GRVV V V  NQ + QG
Sbjct: 11  VKFASIGFILLFG-YFLVADLKMPLTTQAMATRTITQVAPQVSGRVVSVQVANNQKVQQG 69

Query: 89  DVLFRIDPIPFEADVARLKAKVKEASQGALGLESTLKEAQAAV-LKAIAERDKAQREYDR 147
           D+LF +D  PF     + +  +++A Q    L++ +  A A V  K IA   K QRE  R
Sbjct: 70  DLLFSLDATPFLLAQEQAELALEQARQDNAELDAAIAAATAEVNAKEIAYALK-QREAKR 128

Query: 148 YQRGYQRGAFTEQQMDTTRQTYKAAQAALEVAQSKQEQAQIALDSEVGGENTTVAQLLAE 207
            Q  Y   + ++Q +D  +   KA+++ L  A+++  + Q  L    G +N  + Q    
Sbjct: 129 IQSLYANQSVSQQMIDQAQTEVKASRSQLLAAKAQLAKVQ-TLRGLPGEDNLKLRQAKNR 187

Query: 208 LRKAEFDLEQTIVRAPTDGYVTQLALRPGMMSVPLPLAPVMTFVHTEEKIYTAAFRQNSL 267
           L +A   L  T +RA  DG VT + L  G M       PVM  +     +  A FR+ +L
Sbjct: 188 LSQATLALSYTQIRAEHDGVVTNVQLASGNM--VNQSTPVMALLLDNVDV-IADFREKNL 244

Query: 268 QRLQPGFAAEFMFRALPGKVFKGEVIEVLPAIGESQIQARGALL----GTDALRTSGRVF 323
           + + PG  A   F   PG++F+  V  V   + ++Q  A G L         +R + R  
Sbjct: 245 RHIAPGATALVAFDGRPGELFQASVSSVDAGVSQAQFDANGRLATPTESNRWVRDAQRFR 304

Query: 324 VTLRITDDLSQYHLPMGSAVEVAVYSDSFEHVSIMRKVLIRMKSWQNYLY 373
           + L +  D++   LP G+   V +   +  +  +  KV I+  S  +Y+Y
Sbjct: 305 LHLELAPDVA-ITLPAGAKATVQLQPSNVIY-ELFAKVQIKFISLLHYIY 352