Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

 Score =  384 bits (987), Expect = e-111
 Identities = 189/377 (50%), Positives = 269/377 (71%), Gaps = 4/377 (1%)

Query: 1   MDLLLILTYTALCVAVFKVFKIPLNKWTVPTAVLGGVILIGTLILLMNYNHPFTQLGSQV 60
           MDLLLILTYTA+C+A+FK+FKIPLNKWTVPTA+LGG++++G L+LLMNYNHP+T    QV
Sbjct: 1   MDLLLILTYTAICIAIFKIFKIPLNKWTVPTAILGGIVIVGALVLLMNYNHPYTPYARQV 60

Query: 61  YSTTPIVSGVRGRVVEVPVKPNQPLTQGDVLFRIDPIPFEADVARLKAKVKEASQGALGL 120
           ++T PI   VRG V  V  KPN PL +GDVLFRIDP PFEA V + +A +  A      L
Sbjct: 61  FATVPINPAVRGLVTSVEAKPNVPLKKGDVLFRIDPAPFEAVVMQKRAALAAAELEVPQL 120

Query: 121 ESTLKEAQAAVLKAIAERDKAQREYDRYQRGYQRGA----FTEQQMDTTRQTYKAAQAAL 176
           E+  + AQA+V +A A+RD+ +  ++RY++G +RG     FTE ++D  RQ Y A++A L
Sbjct: 121 EAAWQTAQASVERATADRDRTKSAFERYEKGRKRGGANSPFTELELDNKRQLYMASEAQL 180

Query: 177 EVAQSKQEQAQIALDSEVGGENTTVAQLLAELRKAEFDLEQTIVRAPTDGYVTQLALRPG 236
             A+S++ + ++A +S V G NT VA + AEL KA +DLE T+VRAP DG VTQ+ALRPG
Sbjct: 181 TAARSEELRVRLAYESNVDGVNTKVAGIRAELDKALYDLEHTVVRAPADGIVTQMALRPG 240

Query: 237 MMSVPLPLAPVMTFVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRALPGKVFKGEVIEVL 296
           +++VP+PL  +++F+  E++ +  AF QNSL RL+ G  AE +  A PG+VFKG V +VL
Sbjct: 241 VIAVPMPLRSLVSFIPDEDRYFAGAFWQNSLLRLKEGDEAEMILDAAPGQVFKGRVAKVL 300

Query: 297 PAIGESQIQARGALLGTDALRTSGRVFVTLRITDDLSQYHLPMGSAVEVAVYSDSFEHVS 356
           PA+ E + Q++G+L+ + AL   GR  V + + D  ++ + P G + + AVY++ F HV+
Sbjct: 301 PAMAEGEFQSQGSLISSMALLPRGRAIVLIELDDHEAKRNFPAGVSGQAAVYTEHFSHVA 360

Query: 357 IMRKVLIRMKSWQNYLY 373
           +MRKVL+RM+ W NYL+
Sbjct: 361 VMRKVLLRMQGWLNYLF 377