Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

 Score =  116 bits (291), Expect = 8e-31
 Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 5/287 (1%)

Query: 66  IVSGVRGRVVEVPVKPNQPLTQGDVLFRIDPIPFEADVARLKAKVKEASQGALGLESTLK 125
           + S V G + EV V+ NQ +  G+ LF+IDP  +   +   +A +  A Q      + ++
Sbjct: 48  VASEVAGNITEVSVRDNQIVEAGEPLFQIDPRNYRLAMQSAQANLSLAGQNIGASTAAVE 107

Query: 126 EAQAAVLKAIAERDKAQREYDRYQRGYQRGAFTEQQMDTTRQTYKAAQAALEVAQSKQEQ 185
            AQA V+ AIA R+ A+ +  R      +G  ++ ++D   +     QA LE A++   Q
Sbjct: 108 VAQAKVVDAIAARNNAKEQAARVSELAGQGVLSQAELDNAIEARDRTQANLEAAEASLVQ 167

Query: 186 AQIALDSEVGGENTTVAQLLAELRKAEFDLEQTIVRAPTDGYVTQLALRPGMMSVPLPLA 245
           A+ AL    G +N  +   +A L KA+ DL++T V+AP+ G VT L L  G  +     +
Sbjct: 168 ARQAL-GPAGQDNPQILAAMANLEKAQLDLQKTQVKAPSKGVVTNLQLTLGQRA--NVGS 224

Query: 246 PVMTFVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRALPGKVFKGEVIEVLPAIGESQ-- 303
           P++TF+       +A  R+NSL+ ++ G   E +  ALPG+V +G+V  +    G S   
Sbjct: 225 PMLTFIDPRGVWISALVRENSLEHIKVGNKVEIVLDALPGRVLEGKVDSIGWGTGGSNNI 284

Query: 304 IQARGALLGTDALRTSGRVFVTLRITDDLSQYHLPMGSAVEVAVYSD 350
            Q  G L        + R  V +  T      ++  GS   VA Y++
Sbjct: 285 DQNTGFLTADSNGIKAQRYPVNIVFTGTKPPGNIRYGSQATVAFYTE 331