Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

 Score = 94.4 bits (233), Expect = 5e-24
 Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 14/302 (4%)

Query: 55  QLGSQVYSTTPIVSGVRGRVVEVPVKPNQPLTQGDVLFRIDPIPFEADVARLKAKVKEAS 114
           ++  Q+   +P VSG    + +V +  N  +  GD L  IDP PFE  V   K  +++A+
Sbjct: 52  RVNGQLIRISPEVSGP---ISQVLITNNSIVKAGDELVTIDPRPFELAVKAAKFDLQQAA 108

Query: 115 QGALGLESTLKEAQAAVLKAIAERDKAQREYDRYQRGYQRGAFTEQQMDTTRQTYKAAQA 174
           Q      + +  AQA  + A  + + A++  +R +    +G  ++  MD      + AQA
Sbjct: 109 QSYEADSAAISVAQANEVAARVKVNNAKKNVERNRVLANKGTISQAVMDNIIAELETAQA 168

Query: 175 ALEVAQSKQEQAQIALDSEVGGENTTVAQLLAELRKAEFDLEQTIVRAPTDGYVTQLALR 234
            L  A S  E+A+       G +N  +  +L    +A  +L  T + AP +G +T + + 
Sbjct: 169 GLAQASSALEKAKQEFGPR-GIDNPEIQSVLNRQEQALLNLNHTKLTAPANGVITNMDVA 227

Query: 235 PGMMSVPLPLAPVMTFVHTEEKIYTAAFRQNSLQRLQPGFAAEFMFRALPGKVFKGEVIE 294
            G         P++TF++      TA  R+NSL  L+PG   + +F A PG+V++G++  
Sbjct: 228 VG--DYAAAGQPLLTFINNNNLWLTAMVRENSLAHLKPGDKVKIVFDATPGEVYEGKISS 285

Query: 295 VLPAIGES------QIQARGALLGTDALRTSGRVFVTLRITDDLSQYHLPMGSAVEVAVY 348
           +    G S      Q  + G +    +   + R  V +  T   +  +L  G    V  Y
Sbjct: 286 I--GWGSSGNGSLAQDASNGLMTSPTSSSKAQRFPVNIEFTSLPADLNLRYGGRAVVGFY 343

Query: 349 SD 350
            D
Sbjct: 344 PD 345