Pairwise Alignments

Query, 376 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  119 bits (298), Expect = 1e-31
 Identities = 95/350 (27%), Positives = 166/350 (47%), Gaps = 13/350 (3%)

Query: 29  VPTAVLGGVILIGTLILLMNYNHPFTQLGSQVYSTTPIVSGVRGRVVEVPVKPNQPLTQG 88
           V  A+ G V + G   +  +   P T         T +   + G++  + VK NQ + +G
Sbjct: 11  VKIAMFGFVAVFG-YFMFADAMMPLTPQAMATRVVTKVTPQISGKIQTINVKNNQVVAKG 69

Query: 89  DVLFRIDPIPFEADVARLKAKVKEASQGALGLESTLKEAQAAVLKAIAERDKAQREYDRY 148
           D+LF++DP PFE  V++ K  +++  Q    L+++L  A+A V  +       +RE  R 
Sbjct: 70  DLLFQVDPAPFELAVSQAKLALEQVRQDNAELDASLLAAKAEVNASTTTAQLKRREAKRL 129

Query: 149 QRGYQRGAFTEQQMDTTRQTYKAAQAALEVAQSKQEQAQIALDSEVGGENTTVAQLLAEL 208
              Y     ++QQ D       AA+A L  A ++ ++ +++     G EN  V Q    L
Sbjct: 130 DALYATHGVSQQQRDQADSDADAAEANLLAANARLDKLKVS-RGLYGEENLRVRQAKNAL 188

Query: 209 RKAEFDLEQTIVRAPTDGYVTQLALRPG-MMSVPLPLAPVMTFVHTEEKIYTAAFRQNSL 267
            +AE +L  T +RA  DG VT L L  G   +V  PL  ++    +++    A FR+ +L
Sbjct: 189 EQAELNLSYTQIRADQDGVVTNLQLEVGSFAAVGQPLLALV----SDKLDIIADFREKTL 244

Query: 268 QRLQPGFAAEFMFRALPGKVFKGEVIEVLPAIGESQIQARGALLGTDA----LRTSGRVF 323
           + +   + A   F   PG++++ +V  V   +   Q  A G L         +R + R+ 
Sbjct: 245 RGVNASYPALIAFDGEPGRLYRAQVSSVDAGVSAGQFDANGRLAAPQESDRWVRDAQRLR 304

Query: 324 VTLRITDDLSQYHLPMGSAVEVAVYSDSFEHVSIMRKVLIRMKSWQNYLY 373
           + L + DD +  +LP G+   V +  D+    S++ KV I++ S  +Y+Y
Sbjct: 305 LHL-VLDDNAMNNLPAGARATVQLLPDN-TLFSLLAKVQIKVISLLHYIY 352