Pairwise Alignments

Query, 1084 a.a., protease from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score = 67.8 bits (164), Expect = 1e-15
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 6/129 (4%)

Query: 22  LGFASSNQTEDSTQARPTWLRDIALSPDGQKIAFTY-----AGQIWLVPAQGGDAVALTE 76
           LGF  S+ TE  T        D  +SPDG  +  +      +  I+L+PA+GG    +T 
Sbjct: 48  LGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTR 107

Query: 77  SGVYSETPIWSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDIPYAFSADGQQ 136
           + + S    WSPD + +A+   R  + D++ + + GGE RRLT    ++    +SADG+ 
Sbjct: 108 N-LPSYWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEW 166

Query: 137 LYFSSRRLG 145
           +YF+S R G
Sbjct: 167 IYFNSSRTG 175



 Score = 55.1 bits (131), Expect = 7e-12
 Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 43/203 (21%)

Query: 82  ETPIWSPDSQSIAFTADRYGLGDVFILSIQGGESRRLTYHGAKDI--PYAFSADGQQLYF 139
           E P WSPD + +    D    G ++ L   G +   +    A+     +  S DG  L  
Sbjct: 26  EAPNWSPDGKFLIINGD----GRLYRLGFDGSDPTEIDTGFARHCNNDHGISPDGSTLVI 81

Query: 140 SSRRLGDDKANANVKQGSFMAQLYSVPAAGGREQRVLPIAISDLAISPSHSDILYTNQPS 199
           S +           + GS  + +Y +PA GG  + V                    N PS
Sbjct: 82  SDK----------TEFGS--SAIYLLPAEGGTPRLVT------------------RNLPS 111

Query: 200 DEQPWRKGA-------LSDATRDIWQWSPLTGKHTQITTFRGEDRNPVWSADGSSMYYLS 252
               W           + D   DI+      G+  ++T  +G +  P WSADG  +Y+ S
Sbjct: 112 YWHGWSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNS 171

Query: 253 EQAGSFNVWQQRFDGSEPVQITD 275
            + G   +W+ R DG +  +ITD
Sbjct: 172 SRTGRMQIWRVRPDGKDVQRITD 194



 Score = 41.2 bits (95), Expect = 1e-07
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 47  SPDGQKIAFT----YAGQIWLVPAQGGDAVALTESGVYSETPIWSPDSQSIAFTADRYGL 102
           SPDG+ +A+         I+ +P  GG+   LT+    ++ P WS D + I F + R G 
Sbjct: 117 SPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGR 176

Query: 103 GDVFILSIQGGESRRLTYHGAKDIPYAF-----SADGQQL 137
             ++ +   G + +R+T     D PY       S DG+ L
Sbjct: 177 MQIWRVRPDGKDVQRIT-----DSPYGDWFPHPSPDGRHL 211



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 481 WSPDSE---YIVTRDRAMSNGDIQLLKFDGSEAPINLSQSGFSEFAPQFSADGQWVYWLT 537
           WSPD     Y   RD+     DI  +  DG E    L+Q       P +SADG+W+Y+ +
Sbjct: 116 WSPDGRMLAYCGIRDQVF---DIYTIPVDGGEER-RLTQGQGRNDGPDWSADGEWIYFNS 171

Query: 538 DAKGLRDI 545
              G   I
Sbjct: 172 SRTGRMQI 179



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 241 WSADGSSMYYLSEQAGSFNVWQQRFDGSEPVQITDHQKLPVRFLSASLQGDLAYGFDG-- 298
           WS DG  + Y   +   F+++    DG E  ++T  Q         S  G+  Y F+   
Sbjct: 116 WSPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRN-DGPDWSADGEWIY-FNSSR 173

Query: 299 ----EIWRLKAGAKQAEKVPVSIRRS----AMPDGRH 327
               +IWR++   K  +++  S          PDGRH
Sbjct: 174 TGRMQIWRVRPDGKDVQRITDSPYGDWFPHPSPDGRH 210



 Score = 24.6 bits (52), Expect = 0.010
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 354 DVYVVSLLSGLTQRITDTPEAERDVSFSSDGYRLIYASEREGSWNLYQSYVNDGGKSFSS 413
           D+Y + +  G  +R+T          +S+DG  + + S R G   +++  V   GK    
Sbjct: 134 DIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWR--VRPDGKDVQR 191

Query: 414 SLD 416
             D
Sbjct: 192 ITD 194