Pairwise Alignments

Query, 405 a.a., serine/threonine transporter SstT from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., proton/glutamate symporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  131 bits (329), Expect = 4e-35
 Identities = 111/403 (27%), Positives = 189/403 (46%), Gaps = 28/403 (6%)

Query: 15  LVLQILAGILLGAAMATFSPEYAQKVGLIGNLFVGALKAVAPVLVFILVASSIANQKKNQ 74
           L LQI  G++LG  +     E A  +  IG LFV  +K +   LVF    S I      +
Sbjct: 5   LWLQIFVGMVLGILVGVTLGEQASYLKPIGTLFVNTIKMLIVPLVF---CSLIVGVTSME 61

Query: 75  HTYMRPIVVLYLFGTFSAALTAVILSFLFPTTLVLATGA-------EGATPPQGIAEVLN 127
            T     +    F +F    TA+ +S       V+  GA       E     + +  V+ 
Sbjct: 62  DTAKMGRIGFKSF-SFYLCTTAIAISLGLVVGYVIQPGAGVPLLQHEAVNTAKEVPSVMQ 120

Query: 128 TLLFKLVDNPVSALMNANYIGILAWGVGLGLAL----HHSSSTTKAVFEDLSHGISQIVR 183
           TL+  +  NPV+AL +   + ++ + V LG+AL     H     K VFE L+  + ++  
Sbjct: 121 TLIDIVPTNPVAALASGQILQVIVFAVALGIALVLIGDHGKPAIK-VFESLAEAMYKLTD 179

Query: 184 FIIRLAPFGIFGLVASTFATTGFDALAGYAQ-LLAVLLGAMAFIALVVNPMIVYYKIRRN 242
            +++LAP+G+FGL+A      G D L    + ++AV +G +  + L    +++    + N
Sbjct: 180 MVMKLAPYGVFGLMAWVAGEYGIDMLWPLIKVIIAVYIGCIIHV-LGFYSIVLRLFAKLN 238

Query: 243 PFPLVLQCLRESGVTAFFTRSSAANIPVNMALC-EKLKLDEDTYSVSIPLGATINMAGAA 301
           P     + +  +   AF T SSA  +P +M    E L +++   S  +PLG TINM G A
Sbjct: 239 PLHF-FKGISNAMAVAFTTSSSAGTLPASMKCASEYLGVNKKISSFVLPLGTTINMDGTA 297

Query: 302 ITITVLTLAAVHTMGIEVDLMTALLLSVVAAVSACGASGVAGGSLLLIPLACGLFGISND 361
           +   V  L      GI++  +  L + + A +++ G +GV G  L+++ L      + + 
Sbjct: 298 LYQGVTALFVAQAFGIDLTWVDYLTIILTATLASIGTAGVPGAGLVMLTL------VLST 351

Query: 362 IAMQVVAVGFIIGV--IQDSAETALNSSTDALFTAAVCQAEHE 402
           + + +  V  I G+  I D A T +N S D + T  + ++E+E
Sbjct: 352 VGLPLEGVALIAGIDRILDMARTVVNVSGDLVATTVIAKSENE 394