Pairwise Alignments

Query, 290 a.a., HDOD domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.9 bits (154), Expect = 5e-15
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 28/235 (11%)

Query: 7   SHQIRRMNMVKNTMLNRLNELPRLSKVLQELLDMANQPDVDFHQLSKKITLDQILTARLL 66
           +H++R M      +L   + + R+ KVLQ   D  ++P      +   I  + ++TA+LL
Sbjct: 127 THEVRAMLGASALLLPLPDIVQRVRKVLQ---DEQSEPT----DIVDLIAHEPLITAKLL 179

Query: 67  RMANSAYFGGNGHIATVNDAIIRVGIESVRTLV----VASVLSSTFPKIETLDLNDYWTN 122
           ++ANSA+ G +    ++ +AIIR+G++ +  ++    +    +S   K   L +N+Y   
Sbjct: 180 QLANSAFLGFSRATLSIEEAIIRLGVDLISAIISSIAIEQSATSIIDKSAQLRINEY--- 236

Query: 123 TFETALIASKIAEQVGLDKS---ETFTTGVLHNIGELMIHTLMPTEASLIQQKIAQGMDP 179
            ++ AL A KIA  + L KS   E F   ++  IGEL++       + + Q   A     
Sbjct: 237 AYQLALNAQKIANTLSLQKSKQEELFIAALMSVIGELIV------SSRIWQDLFAAQFAD 290

Query: 180 LSAQEEVLGISAPRIGAMLAKEWKFPSEMVDAIKHFDEPREAEISPKLAVAIHFA 234
              ++ ++ IS     A L   W +   + D I    EP  +     LA+ +  A
Sbjct: 291 WPTRKLIVAIS-----AYLLTLWGYSEFLCDIILSSVEPEVSYTDHNLALLLCLA 340