Pairwise Alignments

Query, 624 a.a., DUF839 domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 685 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  372 bits (954), Expect = e-107
 Identities = 255/683 (37%), Positives = 344/683 (50%), Gaps = 95/683 (13%)

Query: 11  FSEMIEAQLSRRHFLA---GSAAVSAGAFLALN-----------PVASAVAAPAT--SNL 54
           F+++++  LSRR+F+    G  A++A A + L            PV      P T  S  
Sbjct: 19  FNQVLDKHLSRRNFVKSGLGLGAMTAFAGMGLTGCGSDSSSSPIPVDPVPPLPPTKSSAK 78

Query: 55  LNFSAIPVSTEDKVIVPKGYKATPLMSWGDPIFANAPEFDQSGKQDSKAQEKQFGDNTDG 114
           LNF+++  +  + V+VP+GY A  L  WG P+ A A  +   G   +  Q    G + DG
Sbjct: 79  LNFTSVKGARLNAVVVPEGYSAQVLAPWGTPLNAKAAPWKADGSNTADDQANSVGMHHDG 138

Query: 115 MSFFPISE--DRGVLAINNEYTNYEYLFDH-------QGKAMTADDVRKAQAAVGVTIVE 165
           M FFP+++  D G+L IN+EY +   L  +        G     D+VRK   A GV++V 
Sbjct: 139 MHFFPLNQAGDDGLLCINHEYIDEIALHPNGPTVDATTGLRTIVDEVRKEINAHGVSVVR 198

Query: 166 VVRKNGQWMVDRQGERNRRITAYTPMMMTGPAAGHDLLKTAEDPSGLKVLGTFNNCANGE 225
           +   N QW V    + NRR T  T M + GP A   LL+T   P G +  GT NNC NG 
Sbjct: 199 IKLTNNQWEVVYNDKHNRRFTGATVMDIAGPLAYSPLLETRYSPDGSQARGTLNNCGNGY 258

Query: 226 TPWGTYLTCEENFDDFFGADQEGSVDADQKRYGIAAEPSDYQWH----------KHDARF 275
           TPWGTYLTCEEN+ ++F      ++  DQ R GI+   S Y W              +RF
Sbjct: 259 TPWGTYLTCEENWPEYF--VNRSTLTRDQIRIGISKTSSRYGWDDLAGQDEERLDEFSRF 316

Query: 276 DITKN--------PKEPNRFGWVVEIDPHNPNSTPLKRTALGRFKHENAALVINNDGH-V 326
           D+T            E N  G++VEIDP+NP S  +KRTALGRF+HE       ++G  V
Sbjct: 317 DVTPKGVSARDDYRNEANGHGYIVEIDPYNPTSRAIKRTALGRFRHEGCTFGKLSEGQPV 376

Query: 327 VVYLGDDERGEHLYKFVSKHRYQAGNDQQNRNLLE-------EGTLYVAKFDINENELKG 379
           V Y G D R E+LYKFVS   +    D  + N LE       EGTLY AKF  NEN   G
Sbjct: 377 VFYSGHDARFEYLYKFVSAAPWNP-QDANSSNRLEIGDKYMNEGTLYAAKF--NEN---G 430

Query: 380 SGRWMELSFGK---NGLTPENGFKDQAEVLIFARRAATQVGATTMDRPEWVAVHPDKKHV 436
            G W+ L+      +G T  N F   A++++    AA  +GAT MDRPEW AV P    V
Sbjct: 431 VGAWLPLTLDSQTTDGKTLGNSFASLADIILNTAGAADLLGATPMDRPEWCAVDPFTGSV 490

Query: 437 FCTLTNNKNRGKEGQPVGGPNPREKNNYGQIVRWMPAQGDHTSDVFAWDLYLIAGNPTVH 496
           + TLTNN  R  E  P    NPR KNN+G I+RW  A  +     F WD++ + G+P+  
Sbjct: 491 YLTLTNNSKR-TEANPA---NPRLKNNFGHIIRWDEADKE---TEFTWDIF-VFGSPS-- 540

Query: 497 KGTLYAGSENISADNMFNSPDGIGFDTAGRLWIQTDGNYSNQGDFAGQGNNQMLCGDPIT 556
            G        ++  N F SPDG+ FD  G LW+QTD   +   + A + N+QML   P T
Sbjct: 541 DGNAETNLSGLTDLNQFASPDGLAFDKRGILWVQTD---NGAEEVAEETNDQMLAIVPST 597

Query: 557 ----------------GEVKRFLTGPIACEITGLTFSPDHKTMFVGVQHPG----EEAAP 596
                            E+KRF  GP  CE+TG   SPD+KT+F  +QHPG       A 
Sbjct: 598 LLDSANKQTSVTAKNQMELKRFFVGPNDCEVTGFAISPDYKTVFANIQHPGNWPYSNNAA 657

Query: 597 SHFPYGGTSKPRSTIMMITREDG 619
              P G   +PR+  ++I + DG
Sbjct: 658 EVTPTGVVLRPRAATVVIRKLDG 680