Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  145 bits (366), Expect = 4e-39
 Identities = 100/363 (27%), Positives = 179/363 (49%), Gaps = 12/363 (3%)

Query: 156 DQVQQVASQLRNQAFMLSIGFLLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSS 215
           D    + S+ R  A ++++   +V +IA+  +L R L+ PL  +    H +A G  DL+ 
Sbjct: 262 DTALAMLSEFRTSA-LIAMVIAVVFIIALLGMLIRVLMQPLLTMGRAMHDIAEGEGDLTR 320

Query: 216 RINFRKDNELGQLANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQ 275
           R+     +E G L  + + F+ ++ ++   +     +V +V+ +V         N   Q 
Sbjct: 321 RLVIHGHDEFGALGTSFNRFVERIHTSIREVASATGQVNEVALRVVSASNSSMFNSDQQA 380

Query: 276 SEISNSVAIGHQSQDSIKAVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAE 335
           S  S+  A  +Q   + + + ++   AS+    A + +ED +  + +     QQL  K  
Sbjct: 381 SRTSSVAAAINQLGAAAQEIAQNAALASQHSSDARSLAEDGQQVVDKTIAAMQQLSAKIS 440

Query: 336 ITTKTATELNTQVEKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRH 395
            +      LN+    +  IL++I SI++QTNLLALNAAIEAARAGE GRGFAVVADEVR+
Sbjct: 441 DSCGNIETLNSNTVNIGQILEVITSISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRN 500

Query: 396 LAEKTSASTNQVETLLTQLSGYSRNLIGYMEESLVAARNCVAAIESGSNLVDKAIIDVNQ 455
           LA +T  S  QV+ ++ +L   +R  +  M +S   + + V         +      + +
Sbjct: 501 LAHRTQDSAQQVQKMIEELQVGAREAVLTMTDSQRQSESSVGIANQAGERLGSVTQRIGE 560

Query: 456 ANSTNQNAVHDSEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKELLRSASQTRSN 515
            +  NQ+    +E+Q  +VE +              +T+  T+++   E L++  +  ++
Sbjct: 561 IDGMNQSVATATEEQTAVVESINVD-----------ITEINTLNQEGVENLQATLRACAD 609

Query: 516 LKQ 518
           L+Q
Sbjct: 610 LEQ 612