Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  144 bits (362), Expect = 1e-38
 Identities = 98/338 (28%), Positives = 169/338 (50%), Gaps = 6/338 (1%)

Query: 177 LLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSSRINFRKDNELGQLANAIDDFI 236
           LL    +IY  L+ T+ + L   + L      G  DLS+R+     +E+  +AN ++   
Sbjct: 336 LLYAFCSIYRALRLTIDSLLGVTRRL------GEGDLSARVAVVSKDEVADIANGLNLMA 389

Query: 237 AKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSEISNSVAIGHQSQDSIKAVT 296
               S+ + +     E+TDV+ ++   IG  + +++ QQ+E        ++   S+  V 
Sbjct: 390 DAFASSISHMDRTSYELTDVASRLGASIGLAKQSMNAQQAETEQVATAINEMTASVADVA 449

Query: 297 ESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQVEKVTDILQ 356
           ++   A+ +  +A T+S +    + +A +  Q L E+ E++ +    L    + +  ++Q
Sbjct: 450 QNTEGAALAADEANTASRNGLRIMHQAHSTIQALAEEVELSAQKVQALALHSQSIGGVIQ 509

Query: 357 MIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVETLLTQLSG 416
           +I +IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA +T AST ++  ++ QL  
Sbjct: 510 VISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTEEIRGIIQQLQS 569

Query: 417 YSRNLIGYMEESLVAARNCVAAIESGSNLVDKAIIDVNQANSTNQNAVHDSEQQNRLVEQ 476
            +   +  M+     A  C++A    S  +      V +    N      + QQ+ + E 
Sbjct: 570 ATDAAVQQMQAGQQKAHACISAASDASGSLSSISQGVERIVEMNTQIASAAVQQHAVSED 629

Query: 477 LLEQLRLLDNHARELLTDSATISEHSKELLRSASQTRS 514
           +   +  + N +  L+      +  + EL R AS  R+
Sbjct: 630 INRNVMEIRNSSGTLMLGIDNNAVTADELARVASDMRN 667