Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 542 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  145 bits (367), Expect = 3e-39
 Identities = 100/337 (29%), Positives = 169/337 (50%), Gaps = 5/337 (1%)

Query: 178 LVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSSRINFRKDNELGQLANAIDDFIA 237
           ++T + + W+  R+L  P+ D   +   +A+   DLS  I     +E  +L  A+    +
Sbjct: 201 VITTLLLAWMYTRSLTGPIGDSLSIAQRIATN--DLSQDIPQHGTDEAAKLIAALATMQS 258

Query: 238 KVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSEISNSVAIGHQSQDSIKAVTE 297
            + +    I D   ++   S ++          I  Q +EI  +    ++   +++ V  
Sbjct: 259 NLRNALTLIGDSSTQLAATSEEMHAVTEDASRTILRQTNEIEMAATAVNEMSAAVEEVAS 318

Query: 298 SIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQVEKVTDILQM 357
           +  +ASE   Q+ T++   +AQ+ E  T    +V K +IT+     L      ++ +L +
Sbjct: 319 NAASASEVTSQSSTAAMAGRAQVDETVTAINLMVSKVQITSTEVQGLAVMATDISKVLDV 378

Query: 358 IRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVETLLTQLSGY 417
           IR+IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA +T  ST ++E ++  +   
Sbjct: 379 IRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTREIEQMVDSIQTG 438

Query: 418 SRNLIGYMEESLVAARNCV-AAIESGSNLVD--KAIIDVNQANSTNQNAVHDSEQQNRLV 474
           + N +  ME++ V A   +  A  +G  L++  ++I  +N+ N     A  +  Q  R V
Sbjct: 439 TGNAVSAMEQTSVQAHKTLEMANGAGKALLEITESISQINERNLMIATAAEEQAQVAREV 498

Query: 475 EQLLEQLRLLDNHARELLTDSATISEHSKELLRSASQ 511
           ++ L  +R L +   E    +A  +     L  S ++
Sbjct: 499 DRSLVSIRDLSSQTSEGSNQTAIATAELSTLASSLNR 535