Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., Histidine kinase, HAMP region:Cache:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  154 bits (388), Expect = 1e-41
 Identities = 117/401 (29%), Positives = 199/401 (49%), Gaps = 21/401 (5%)

Query: 118 DQAVRKNT-DGHEGLLIIVPLKAGKNADLVGYLVTEWGFDQVQQVASQLRNQAFMLSIGF 176
           D  +R+ T +G + LL   P+    +AD   Y+      D+     SQ R+ A M+++  
Sbjct: 225 DARLREVTLNGQQRLLSFTPITGLPSADW--YIGLSIDKDKAYAPLSQFRSSA-MVAVLI 281

Query: 177 LLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSSRINFRKDNELGQLANAIDDFI 236
            +  +  +  LL R L+ PL D+      +A G  DL+ R++ +  +E   L  + + F+
Sbjct: 282 AVAVIALLLSLLIRALMRPLTDMGRAMQDIAQGEGDLTRRLSIQGKDEFAALGGSFNQFV 341

Query: 237 AKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSEISNSVA----IGHQSQDSI 292
            +V ++   +    ++V D+S +V             Q +  +N  A    +G  +Q+  
Sbjct: 342 ERVHASIVEVSSATLQVHDLSQRVVNSSNSSIVGFDEQSARTNNVAAAINELGAATQEIA 401

Query: 293 KAVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQVEKVT 352
           +  +++   ASE+  QA    ED +  + +       L  K   +     +LN   E + 
Sbjct: 402 RNASDASIQASEARNQA----EDGQVVVEKTIHAMSALSAKISDSCTQIEQLNASTENIG 457

Query: 353 DILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVETLLT 412
            IL +I+ I++QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +T  S +++  ++ 
Sbjct: 458 HILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQTSADEIHKMIG 517

Query: 413 QLSGYSRNLIGYMEESLVAARNCV-AAIESGSNLVDKAIIDVNQANSTNQNAVHDSEQQN 471
            L   S++ +  M ES  +++  V  A ++GS L D     +   +  NQ+    +E+Q 
Sbjct: 518 SLQSGSQHAVLNMNESQTSSQESVEVANQAGSRLRD-VTRRIGDIDGMNQSVAAATEEQT 576

Query: 472 RLVEQL---LEQLRLLDN----HARELLTDSATISEHSKEL 505
            +VE L   + Q+  L+     +  E L D A +S+ +  L
Sbjct: 577 AVVETLNIDINQINTLNQQGVANLNETLKDCAALSQQAGRL 617