Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  147 bits (372), Expect = 9e-40
 Identities = 93/340 (27%), Positives = 165/340 (48%), Gaps = 2/340 (0%)

Query: 168 QAFMLSIGFLLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSSRINFRKDNELGQ 227
           Q  + +    +V  I   W++ R +  PL +   +   +ASG  DLS  +N  + +ELG+
Sbjct: 287 QMIIAATALAMVLGILAAWVITRQITTPLQETLEVVERVASG--DLSRNLNVDRKDELGK 344

Query: 228 LANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSEISNSVAIGHQ 287
           L   I      +      I+D + ++   + ++     +    +++Q+ E        H+
Sbjct: 345 LQATIQRMTVSLRELVGGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHE 404

Query: 288 SQDSIKAVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQ 347
              +++ V  +   ASE+   A   + D +  + EA  Q ++L      +++    L  +
Sbjct: 405 MTATVQEVARNAEEASEAAVAADRQARDGERVVNEAIAQIERLASAVGNSSEAMGALKQE 464

Query: 348 VEKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQV 407
            +K+  +L +I+S+AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA++T  ST ++
Sbjct: 465 SDKIGSVLDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQKSTEEI 524

Query: 408 ETLLTQLSGYSRNLIGYMEESLVAARNCVAAIESGSNLVDKAIIDVNQANSTNQNAVHDS 467
           E L+ +L   ++     M+ S   + + V         +      V+   + NQ     +
Sbjct: 525 EALIARLQSGTQQATTVMDSSRELSTSSVELTRRAGGSLANITKTVSSIQAMNQQIAAAA 584

Query: 468 EQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKELLR 507
           E+Q+   E++   +  + + + +    S   +  S EL R
Sbjct: 585 EEQSATAEEINRSIINVRDVSEQTSAASEETAASSVELAR 624