Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  140 bits (353), Expect = 1e-37
 Identities = 107/352 (30%), Positives = 175/352 (49%), Gaps = 8/352 (2%)

Query: 169 AFMLSIGFLLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSSRINFRKDNELGQL 228
           A ++S+G +L+  + + WLL   L   L  L      +ASG  DLS RI+ ++++ELG +
Sbjct: 314 ACLMSLGIILLVGVTV-WLLLLPLRRQLESLLGAMDNMASGEGDLSRRIDIQREDELGLM 372

Query: 229 ANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSEISNSVAIGHQS 288
           A+A + F AKV+      +D   +V D   +  +        +  Q+++I +  A   + 
Sbjct: 373 ADAFNRFAAKVQQMLRQTRDLTRDVDDGIVEARKICDVAVGAVSRQKAQIDSVAAAAIEM 432

Query: 289 QDSIKAVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQV 348
             + + +  S    ++  + A T ++D K  + EA +  + L  +         EL    
Sbjct: 433 AHTSQEMAASAQRTADFAETAQTQADDGKQIVAEATSGIETLSSRVIEAAAVIKELRGSS 492

Query: 349 EKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVE 408
           EK+ ++L +IR+IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA +T  ST  ++
Sbjct: 493 EKIGEVLSVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQDSTANIQ 552

Query: 409 TLLTQLSGYSRNLIGYMEESLVAARN---CVAAIESGSNLVDKAIIDVNQANSTNQNAVH 465
            ++ +L   +      ME  +  A+      + ++     +  AI  + Q  +    A+ 
Sbjct: 553 GIIQRLQQSAMEAESVMEAGVNDAKRGQLLTSQVQDSLGKITDAIGAILQQTTEITVAIG 612

Query: 466 DSEQQNRLVEQLLEQLRLL--DNH--ARELLTDSATISEHSKELLRSASQTR 513
                   V Q +E +R L  D+H  ++EL        + +  L  + SQ R
Sbjct: 613 QQAVVADEVAQNVENVRGLSDDSHSASQELAVSLKAFEQLTHALSGNISQFR 664