Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  140 bits (353), Expect = 1e-37
 Identities = 99/340 (29%), Positives = 165/340 (48%), Gaps = 34/340 (10%)

Query: 156 DQVQQVASQLRNQAFMLSIGFLLVTL-------IAIYWLLQRTLIAPLNDLKVLCHALAS 208
           D++     Q  N   ML +  L V L       +++   L R+++   N ++      A 
Sbjct: 296 DELTDARLQTANWHMMLMMSALAVVLFLVAMMGLSVMGYLNRSVVHIENQMR-----RAR 350

Query: 209 GSCDLSSRINFRKDNELGQLANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLE 268
              DLS+RI     +ELG L NA +  +   E+    +K   ++VTD   ++E    ++ 
Sbjct: 351 EEFDLSTRITLDSTDELGSLGNAFNGMMNDFEAVIHQVKTNSLKVTDAVKRMESHSNQMR 410

Query: 269 HNIHNQQSEISNSVAIGHQSQDSI-KAVTESIYAASESLKQAVTSSEDSKAQLREAQTQN 327
           H+           VA GH   + +  A+TE     S+    AV ++  S    +EA+T N
Sbjct: 411 HD-----------VAQGHSEAEQVASAMTEMSATVSQIASNAVEAASASGKANQEARTGN 459

Query: 328 QQ----------LVEKAEITTKTATELNTQVEKVTDILQMIRSIAEQTNLLALNAAIEAA 377
           ++          L  + +      T+L+T ++ +  +L++I  IAEQTNLLALNAAIEAA
Sbjct: 460 KEVGNTGKTISALASEIDAAAIAITKLDTDIQGIVSVLEVISGIAEQTNLLALNAAIEAA 519

Query: 378 RAGENGRGFAVVADEVRHLAEKTSASTNQVETLLTQLSGYSRNLIGYMEESLVAARNCVA 437
           RAGE GRGFAVVADEVR LA++  +ST  + T+  +L   +R  +  M      A+  V 
Sbjct: 520 RAGEMGRGFAVVADEVRSLAQRAQSSTTDIRTMTERLKEGARVAVDAMSRGQTQAQASVQ 579

Query: 438 AIESGSNLVDKAIIDVNQANSTNQNAVHDSEQQNRLVEQL 477
            +      + + +  V+  +S N+     + +Q+ + E++
Sbjct: 580 EVNHAGEELRRIVDYVSVIDSMNEQIAAATHEQSAVAEEV 619