Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  141 bits (356), Expect = 7e-38
 Identities = 103/352 (29%), Positives = 179/352 (50%), Gaps = 20/352 (5%)

Query: 177 LLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSSRINFRKDNELGQLANAIDDFI 236
           L++  +A    L   +IA +  LK     L++G  DL+SR+     +EL  + ++++ FI
Sbjct: 343 LIIIALAFCVFLLNKIIADMVMLKNRIDTLSTGDADLTSRLAITSKDELAAIGHSVNSFI 402

Query: 237 AKVESTFAPIKDRIVEVTDVSHKVEQQIGRLE-HNIHNQQ------SEISNSVAIGHQSQ 289
             +++        ++E++  S K+ Q IG+L+ H+ +N+Q      SE    V    Q  
Sbjct: 403 GYLQAM-------MLEISHASQKITQGIGQLDSHSENNRQALSKHSSETELVVTAISQMN 455

Query: 290 DSIKAVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQVE 349
            S  AV +S    + S  QA   ++ S   + +A    Q L  +    +++   ++    
Sbjct: 456 ASADAVAQSAGKMAASTHQANEEAKTSTLTVSDAAGSVQALANEMNSASQSIHTMSENTN 515

Query: 350 KVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVET 409
           ++  +L +I+ IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA +T + T Q+E 
Sbjct: 516 QIISVLGVIKEIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSCTTQIEQ 575

Query: 410 LLTQL---SGYSRNLIGYMEESLVAARNCVAAIESGSNLVDKAIIDVNQANSTNQNAVHD 466
           +LT L   +  +  L+   + S        A + S    V  +I ++N       +A   
Sbjct: 576 ILTTLRRDADTAEQLMLETQNSCQQVTQNTARVTSNLGAVTDSIAELNDLGGQIASA--- 632

Query: 467 SEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKELLRSASQTRSNLKQ 518
           SEQQ+ +  ++ + +  ++  A+ LL +     E ++ L  +  Q  + +++
Sbjct: 633 SEQQSVVTAEISQNMHTIEAMAQTLLQNGQQTLESTQSLSAANQQLSAMVRK 684