Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  144 bits (363), Expect = 1e-38
 Identities = 110/355 (30%), Positives = 182/355 (51%), Gaps = 10/355 (2%)

Query: 171 MLSIGFLLVTLIAIYW--LLQRTLIAPLNDLKVLCHALASGSCDLSSRINFRKDNELGQL 228
           +L I  ++V+LIA+    L+ R+++APL  ++     LAS   DL+ ++      EL  L
Sbjct: 353 LLLIVGVIVSLIAVVTISLVIRSIVAPLKVIQSRVENLASAEGDLTQQVTVESHAELIAL 412

Query: 229 ANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHN-IHNQQSEISNSV-AIGH 286
              I+ FI K+      +K+ +   +    +V  +I +  HN ++ Q S+I + V A+  
Sbjct: 413 GGGINGFINKLRLLIGELKE-LASRSQAESQVAAEIAQQTHNSVNRQYSDIESVVTAVNE 471

Query: 287 QSQDSIKAVTESIYAASES--LKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATEL 344
            S  +++    S   ASE+  +   V + EDS +Q     T   Q    A+       E 
Sbjct: 472 MSATALEVAKASEQTASETEAMTLNVKAGEDSLSQAMGYVTHMSQESLLAKEAVGKVAES 531

Query: 345 NTQVEKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSAST 404
           +T + K   IL++I +IAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA KT +ST
Sbjct: 532 STNISK---ILEVISAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSST 588

Query: 405 NQVETLLTQLSGYSRNLIGYMEESLVAARNCVAAIESGSNLVDKAIIDVNQANSTNQNAV 464
           +++  L+  L     +    +++ +  A+  VA  ES  + ++  +  + + +S   +  
Sbjct: 589 DEIGKLIEALQREVNSASQIIDQGVDGAQRAVAQTESALSSLNTIVNQIQEVSSQVTHIA 648

Query: 465 HDSEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKELLRSASQTRSNLKQL 519
             +E+Q+ + E++   +  + + A EL   +    + S  L     Q    L +L
Sbjct: 649 TAAEEQSAVTEEVSRNITGISDSASELARLADEAQQSSASLAGLVEQQHQQLGKL 703