Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  142 bits (358), Expect = 4e-38
 Identities = 108/364 (29%), Positives = 177/364 (48%), Gaps = 16/364 (4%)

Query: 159 QQVASQLRNQAFMLSIGFLLVTLIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSSRIN 218
           Q + S L + A ML     +  L+ + +LL R    P+  LK +   L+ G+ DL+ R+ 
Sbjct: 275 QALTSALVSSAIMLLCAISI--LLGVLYLLYR----PILSLKAMVTELSKGNGDLTKRLE 328

Query: 219 FRKDNELGQLANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSEI 278
              +++LGQ++  I+ FIA ++   A +++ +     +S  VE+  G  E N H   +  
Sbjct: 329 IHCEDDLGQISMGINQFIANLQ---AMMREVLQASAHISGSVERLNGETETNRHILSAHT 385

Query: 279 SNSVAIGHQSQDSIKAVTESIYAASESLKQAVTSSED---SKAQLREAQTQNQQLVEKAE 335
             +  I    ++      +     SE+      ++E    SK  + +A     +LV + E
Sbjct: 386 KETEQIVAAVEEMSATANDVAQNGSETASFTQLTNEQALASKQVVAQATETVNRLVREVE 445

Query: 336 ITTKTATELNTQVEKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRH 395
            T     +++     +T +L++I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR 
Sbjct: 446 HTADKIGQIDRDTINITQVLKVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRA 505

Query: 396 LAEKTSASTNQVETLLTQLSGYSRNLIGYMEESLVAARNCVAAIESGSNLVDKAIIDVNQ 455
           LA +T  ST ++E  L+ L   S + I  ME +        +  E  +  +D     VNQ
Sbjct: 506 LAARTQDSTAEIEETLSNLRDASNSAIHSMEVTKQTCLETASTTERVATDLDAIGSSVNQ 565

Query: 456 ANSTNQNAVHDSEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKELLRSASQTRSN 515
            N  N      +E+Q+ +  ++   +  + + A EL    A   E S+    + +     
Sbjct: 566 INDLNTQIATAAEEQSSVSAEITRNMSAICDMANEL----ARSGESSRNETVNLATANQQ 621

Query: 516 LKQL 519
           L+Q+
Sbjct: 622 LEQI 625