Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 698 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  137 bits (346), Expect = 1e-36
 Identities = 105/405 (25%), Positives = 198/405 (48%), Gaps = 47/405 (11%)

Query: 130 GLLIIVPLKAGKNADLVGYLVTEWGFDQVQQVASQLRNQAFMLSIGFLLVTLIAIY--WL 187
           G  ++  LKA   AD          F++ Q   ++  N  + +++  L    +A+   WL
Sbjct: 318 GKALVDELKASARAD----------FERAQ---ARYENILWAMALATLAALALAVVGGWL 364

Query: 188 LQRTLIAPLNDLKVLCHALASGSCDLSSRINFRKDNELGQLANAIDDFIAKVESTFAPIK 247
           L R ++ P+         +A G  DL+S I+  + +E GQL       + ++ +  A +K
Sbjct: 365 LVRAIVNPMRQAIDTFKLIAEG--DLTSDIDISRRDEAGQL-------LCQLATMQATLK 415

Query: 248 DRIVEVTDVSHKVEQQIGRLEHNIH----NQQSEISNSVAIGHQSQDSIKAVTESIYAAS 303
             + ++ + S +++Q+  +LE  +       Q ++ +  +I   +++  ++V E    A 
Sbjct: 416 AMLDQIQEASRQMDQRCSQLESEVALVAAKSQQQLDDVQSIAAATEEFSQSVQEVAGHAG 475

Query: 304 ESLKQAVTSS---EDSKAQLREAQTQNQQLVEKAEITTKTATELNTQVEKVTDILQMIRS 360
           E+   A  S    E+S  Q+  +     ++VE    ++ T  ELNT ++++  I Q+I+ 
Sbjct: 476 ETASAAQNSERLVEESNTQIGRSMAVTNRVVEAVTGSSATLHELNTAIDQIGQITQVIKE 535

Query: 361 IAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVETLLTQLSGYSRN 420
           IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LAE+T+ ST  +   +  + G +  
Sbjct: 536 IADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERTTTSTADITGNIGAIQGATHE 595

Query: 421 LIGYMEESLVAARNCVAAIESGSNLVDKAIIDVNQANSTNQNA------VHDSEQQNRLV 474
            +  ME++       V  +E G  ++ +++  +    + +Q        + ++ QQ  + 
Sbjct: 596 AVNRMEQA-------VREVEEGIGMMRESVAGLEGITAASQQVSAMARQISEASQQQSIA 648

Query: 475 EQLLEQLRLLDNHARELLTDSATISEHSKELLRSASQTRSNLKQL 519
            Q   ++     H   L+  +   ++ ++    +   T  +L+ +
Sbjct: 649 SQ---EVNGSMEHISVLIEQNTATAQEAQRATEALVSTAEDLRAI 690