Pairwise Alignments

Query, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (362), Expect = 1e-38
 Identities = 97/364 (26%), Positives = 176/364 (48%), Gaps = 13/364 (3%)

Query: 160 QVASQLRNQAFMLSIGFLLVT--LIAIYWLLQRTLIAPLNDLKVLCHALASGSCDLSSRI 217
           +V + LR+  + + I  L++    I +  ++  ++  P+  +  +   +  G  DL  R+
Sbjct: 279 EVFALLRDAVYQILIWTLIIAAGFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRL 338

Query: 218 NFRKDNELGQLANAIDDFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSE 277
                +E+ QLA   + FI+K++ +   +     ++   +  V  Q  +   + H Q+  
Sbjct: 339 PVNGKDEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDR 398

Query: 278 ISNSVAIGHQSQDSIKAVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEIT 337
               V   ++   ++  +  +   A+ + K A T S   +  +  A+    QL    E  
Sbjct: 399 TMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQV 458

Query: 338 TKTATELNTQVEKVTDILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLA 397
            +    L T  + +  IL +IR+I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA
Sbjct: 459 GEVIESLATHTKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLA 518

Query: 398 EKTSASTNQVETLLTQLSGYSRNLIGYMEESLVAARNCVAAIESGSNLVDKAIIDVNQAN 457
            +T+ASTN+V+ ++ +L   +   +  M +S   +   V A++  S  +      +   +
Sbjct: 519 SRTAASTNEVQGMIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLIS 578

Query: 458 STNQNAVHDSEQQNRLVEQLLEQLRLLDNHARELLTDSATISEHSKELLRSASQTRSNLK 517
             N      +E+Q+ +VE +              +T+   I++ +    ++A+Q    L 
Sbjct: 579 DMNIQVAAATEEQSTVVEDI-----------NRNVTEINDITQRTASTAQAAAQASLALN 627

Query: 518 QLSH 521
           QL+H
Sbjct: 628 QLAH 631